Resource

Id DNase-seq/ENCSR017TFHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR017TFH [biosample_summary="Homo sapiens right kidney tissue female embryo (87 days)"]
Description
Labels
  • accession: ENCSR017TFH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004539/
  • biosample_summary: Homo sapiens right kidney tissue female embryo (87 days)
  • date_created: 2015-09-16T21:43:06.257033+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR017TFH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (87 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR017TFH float

DNase-seq_ENCSR017TFH

DNase-seq ENCSR017TFH [biosample_summary="Homo sapiens right kidney tissue female embryo (87 days)"]
HISTOGRAM FOR DNase-seq_ENCSR017TFH [0.253, 20.3]
n
9,440,650
mean
2.96
sd
2.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 94406500.29% 52425
chr1 865258 0.35% 4768
chr2 732330 0.30% 4111
chr3 611614 0.31% 3401
chr4 493145 0.26% 2762
chr5 538778 0.30% 2975
chr6 562150 0.33% 3097
chr7 474849 0.30% 2686
chr8 420481 0.29% 2385
chr9 384446 0.28% 2155
chr10 438841 0.33% 2469
chr11 495510 0.37% 2762
chr12 477781 0.36% 2635
chr13 251370 0.22% 1383
chr14 303752 0.28% 1663
chr15 318669 0.31% 1759
chr16 309571 0.34% 1721
chr17 369634 0.44% 2026
chr18 223255 0.28% 1259
chr19 416826 0.71% 2128
chr20 238992 0.37% 1366
chr21 97781 0.21% 564
chr22 153589 0.30% 869
chrX 261786 0.17% 1479
chrY 242 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 52425 1 1040 180.08 177
global segment-length histogram

Files

Filename Size md5
ENCFF691WRQ.bed.gz 553.87 KB 42d04b5d12e6cfdd64c4b53846c9d6d8
ENCFF691WRQ.tabix.bed.gz 492.65 KB ece2e1cb852f8478ed1b8103db8a3c87
ENCFF691WRQ.tabix.bed.gz.tbi 294.63 KB d0ed6b8af321ec4d3280ddab238fa6f3
genomic_resource.yaml 1.84 KB 4dc8b4ca47b4c16f65baa234a6f37326
statistics/