Resource

Id DNase-seq/ENCSR015BGHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR015BGH [biosample_summary="Homo sapiens caudate nucleus tissue male adult (78 years)"]
Description
Labels
  • accession: ENCSR015BGH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001873/
  • biosample_summary: Homo sapiens caudate nucleus tissue male adult (78 years)
  • date_created: 2014-06-25T20:03:31.743050+00:00
  • date_released: 2016-05-09
  • doi: 10.17989/ENCSR015BGH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (78 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR015BGH float

DNase-seq_ENCSR015BGH
DNase-seq ENCSR015BGH [biosample_summary="Homo sapiens caudate nucleus tissue male adult (78 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR015BGH [4.41, 3.4e+03]
n
30,603,420
mean
23.8
sd
30.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 306034200.95% 203322
chr1 2752340 1.11% 18292
chr2 2531310 1.05% 16819
chr3 2096270 1.06% 13919
chr4 1654730 0.87% 10989
chr5 1819980 1.00% 12086
chr6 1895540 1.11% 12602
chr7 1635170 1.03% 10853
chr8 1485530 1.02% 9865
chr9 1276280 0.92% 8482
chr10 1514260 1.13% 10060
chr11 1663920 1.23% 11046
chr12 1491490 1.12% 9911
chr13 866610 0.76% 5755
chr14 1010860 0.94% 6716
chr15 944700 0.93% 6288
chr16 974420 1.08% 6478
chr17 1181130 1.42% 7845
chr18 741180 0.92% 4924
chr19 811540 1.38% 5396
chr20 767590 1.19% 5097
chr21 383860 0.82% 2550
chr22 497030 0.98% 3307
chrX 563350 0.36% 3747
chrY 44330 0.08% 295
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 203322 150 490 150.52 150
global segment-length histogram

Files

Filename Size md5
ENCFF745CSH.bed.gz 2.64 MB 6bd15b3ca7af60d303bfaf9b9f349841
ENCFF745CSH.tabix.bed.gz 1.86 MB 92c3404e61a3e39f142be1ce291d0112
ENCFF745CSH.tabix.bed.gz.tbi 625.8 KB 155d06e3e1b427921bf274e92cff3ec5
genomic_resource.yaml 1.22 KB 3c597ced68cf880729925cd05eff782d
statistics/