Resource

Id DNase-seq/ENCSR012RCXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR012RCX [biosample_summary="Homo sapiens immature natural killer cell"]
Description
Labels
  • accession: ENCSR012RCX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000823/
  • biosample_summary: Homo sapiens immature natural killer cell
  • date_created: 2022-02-07T22:20:21.892145+00:00
  • date_released: 2022-02-25
  • doi: 10.17989/ENCSR012RCX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR012RCX float

DNase-seq_ENCSR012RCX

DNase-seq ENCSR012RCX [biosample_summary="Homo sapiens immature natural killer cell"]
HISTOGRAM FOR DNase-seq_ENCSR012RCX [0.105, 47.9]
n
14,188,200
mean
4.17
sd
5.73

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 141882000.44% 66956
chr1 1395556 0.56% 6569
chr2 1053758 0.44% 5037
chr3 792622 0.40% 3751
chr4 519603 0.27% 2460
chr5 658813 0.36% 3149
chr6 855700 0.50% 4006
chr7 675364 0.42% 3204
chr8 546539 0.38% 2609
chr9 579196 0.42% 2748
chr10 655262 0.49% 3129
chr11 686218 0.51% 3255
chr12 713864 0.54% 3336
chr13 299835 0.26% 1392
chr14 486445 0.45% 2291
chr15 460069 0.45% 2225
chr16 556592 0.62% 2598
chr17 813912 0.98% 3767
chr18 266254 0.33% 1242
chr19 835536 1.43% 3856
chr20 405103 0.63% 1919
chr21 175187 0.38% 830
chr22 329068 0.65% 1553
chrX 427544 0.27% 2029
chrY 160 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 66956 1 960 211.9 200
global segment-length histogram

Files

Filename Size md5
ENCFF533PTT.bed.gz 742.74 KB 54c0b0ca404e585b90be131f78d20ab2
ENCFF533PTT.tabix.bed.gz 683.58 KB d67cb95e8c6f79aff1e86197c2713202
ENCFF533PTT.tabix.bed.gz.tbi 285.94 KB d7531a1f5b5e9b014bfe452c2f6a260d
genomic_resource.yaml 1.14 KB 7954832b85ccda15b61bdcb3ebc16e42
statistics/