Resource

Id DNase-seq/ENCSR011VJKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR011VJK [biosample_summary="Homo sapiens suppressor macrophage male adult (24 years) treated with lipopolysaccharide for 1 hour"]
Description
Labels
  • accession: ENCSR011VJK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000862/
  • biosample_summary: Homo sapiens suppressor macrophage male adult (24 years) treated with lipopolysaccharide for 1 hour
  • date_created: 2018-11-29T17:36:42.240741+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR011VJK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (24 years) treated with lipopolysaccharide for 1 hour
  • status: released
  • submitter_comment: This dataset was originally submitted with 3 anisogenic replicates. The second replicate has been moved to ENCSR564XXO and the third replicate has been moved to ENCSR405FAK.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR011VJK float

DNase-seq_ENCSR011VJK
DNase-seq ENCSR011VJK [biosample_summary="Homo sapiens suppressor macrophage male adult (24 years) treated with lipopolysaccharide for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR011VJK [0.0481, 26.8]
n
39,567,549
mean
2.19
sd
2.79

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 395675491.23% 216270
chr1 3797517 1.53% 20701
chr2 3226153 1.33% 17689
chr3 2597055 1.31% 14253
chr4 1844552 0.97% 10049
chr5 2170705 1.20% 11874
chr6 2489098 1.46% 13368
chr7 1950975 1.22% 10692
chr8 1823857 1.26% 9988
chr9 1693004 1.22% 9263
chr10 1966143 1.47% 10719
chr11 1928913 1.43% 10532
chr12 1977285 1.48% 10840
chr13 959987 0.84% 5290
chr14 1234409 1.15% 6740
chr15 1331338 1.31% 7275
chr16 1236709 1.37% 6844
chr17 1752893 2.11% 9532
chr18 832389 1.04% 4593
chr19 1353494 2.31% 7313
chr20 1076661 1.67% 5917
chr21 500784 1.07% 2657
chr22 696042 1.37% 3845
chrX 1087280 0.70% 6055
chrY 40306 0.07% 241
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 216270 1 1220 182.95 180
global segment-length histogram

Files

Filename Size md5
ENCFF802NWG.bed.gz 2.33 MB d17161a559ad25e638c017aecfe73d21
ENCFF802NWG.tabix.bed.gz 2.12 MB f76889854b932c69bbb085d84a020a23
ENCFF802NWG.tabix.bed.gz.tbi 612.73 KB f721ba0b644043e0deb0d981560bdfdb
genomic_resource.yaml 1.62 KB d97767481667ee5d70d76c66d690b929
statistics/