Resource

Id DNase-seq/ENCSR011VHKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR011VHK [biosample_summary="Homo sapiens with multiple sclerosis; naive B cell"]
Description
Labels
  • accession: ENCSR011VHK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000788/
  • biosample_summary: Homo sapiens with multiple sclerosis; naive B cell
  • date_created: 2022-02-07T22:20:22.218079+00:00
  • date_released: 2022-02-25
  • doi: 10.17989/ENCSR011VHK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: with multiple sclerosis
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR011VHK float

DNase-seq_ENCSR011VHK

DNase-seq ENCSR011VHK [biosample_summary="Homo sapiens with multiple sclerosis; naive B cell"]
HISTOGRAM FOR DNase-seq_ENCSR011VHK [0.13, 35.2]
n
12,931,653
mean
3.12
sd
3.88

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 129316530.40% 62708
chr1 1259195 0.51% 6092
chr2 945452 0.39% 4584
chr3 747341 0.38% 3640
chr4 508421 0.27% 2456
chr5 632754 0.35% 3030
chr6 840687 0.49% 4029
chr7 629740 0.40% 3080
chr8 528516 0.36% 2598
chr9 532883 0.39% 2616
chr10 570399 0.43% 2754
chr11 643225 0.48% 3107
chr12 686122 0.51% 3308
chr13 267154 0.23% 1292
chr14 439125 0.41% 2143
chr15 397254 0.39% 1943
chr16 481360 0.53% 2370
chr17 699773 0.84% 3355
chr18 238417 0.30% 1179
chr19 713162 1.22% 3341
chr20 322301 0.50% 1627
chr21 153795 0.33% 744
chr22 295891 0.58% 1486
chrX 398268 0.26% 1931
chrY 418 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 62708 3 940 206.22 200
global segment-length histogram

Files

Filename Size md5
ENCFF581DQN.bed.gz 688.76 KB 9af037f654477f005e0f3a671a1dedaf
ENCFF581DQN.tabix.bed.gz 633.4 KB 1ebbd0d934f4323ed03120fbaa24e976
ENCFF581DQN.tabix.bed.gz.tbi 281.81 KB 4aa6b2b5e2cf7beae7d3531472a2de5d
genomic_resource.yaml 2.02 KB a7013b513cf147aa86f7dcde444c24df
statistics/