Resource
| Id | DNase-seq/ENCSR010ZMK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR010ZMK [biosample_summary="Homo sapiens muscle of back tissue female embryo (113 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (113 days) output_type: peaks audit_warning: Alignment file {ENCFF128SBY|/files/ENCFF128SBY/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 34802757 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR010ZMK | float |
DNase-seq_ENCSR010ZMK |
DNase-seq ENCSR010ZMK [biosample_summary="Homo sapiens muscle of back tissue female embryo (113 days)"]
|
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[0.173, 22.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 12570384 | 0.39% | 67878 |
| chr1 | 1139924 | 0.46% | 6090 |
| chr2 | 1004726 | 0.41% | 5493 |
| chr3 | 819284 | 0.41% | 4447 |
| chr4 | 639943 | 0.34% | 3477 |
| chr5 | 700541 | 0.39% | 3814 |
| chr6 | 784948 | 0.46% | 4232 |
| chr7 | 628941 | 0.39% | 3418 |
| chr8 | 594224 | 0.41% | 3222 |
| chr9 | 530553 | 0.38% | 2842 |
| chr10 | 588769 | 0.44% | 3202 |
| chr11 | 635347 | 0.47% | 3430 |
| chr12 | 625474 | 0.47% | 3365 |
| chr13 | 344856 | 0.30% | 1886 |
| chr14 | 415482 | 0.39% | 2218 |
| chr15 | 403101 | 0.40% | 2191 |
| chr16 | 389578 | 0.43% | 2102 |
| chr17 | 521383 | 0.63% | 2815 |
| chr18 | 278151 | 0.35% | 1518 |
| chr19 | 496966 | 0.85% | 2482 |
| chr20 | 307061 | 0.48% | 1684 |
| chr21 | 142297 | 0.30% | 763 |
| chr22 | 212767 | 0.42% | 1158 |
| chrX | 365908 | 0.23% | 2028 |
| chrY | 160 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 67878 | 1 | 900 | 185.19 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF746PGG.bed.gz | 720.01 KB | eb19ac364de8abe5aa497c7d6a28e7fc |
| ENCFF746PGG.tabix.bed.gz | 643.69 KB | 986b9e02fee84ec260d9eb0e091c91b3 |
| ENCFF746PGG.tabix.bed.gz.tbi | 355.67 KB | b7b2a13fa03a4121535c7483a1af4faa |
| genomic_resource.yaml | 1.85 KB | 4c2dc75a136b9f69085dbe9667c4ad21 |
| statistics/ |
