Resource

Id DNase-seq/ENCSR009MDCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR009MDC [biosample_summary="Homo sapiens activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 7 days, 10 ng/mL Interleukin-2 for 5 days"]
Description
Labels
  • accession: ENCSR009MDC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000502/
  • biosample_summary: Homo sapiens activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 7 days, 10 ng/mL Interleukin-2 for 5 days
  • date_created: 2021-08-24T22:56:05.845041+00:00
  • date_released: 2021-11-04
  • doi: 10.17989/ENCSR009MDC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 7 days, 10 ng/mL Interleukin-2 for 5 days
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR009MDC float

DNase-seq_ENCSR009MDC
DNase-seq ENCSR009MDC [biosample_summary="Homo sapiens activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 7 days, 10 ng/mL Interleukin-2 for 5 days"]
 HISTOGRAM FOR DNase-seq_ENCSR009MDC [0.0486, 40.8]
n
19,091,821
mean
2.66
sd
3.75

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 190918210.59% 82996
chr1 1839408 0.74% 7818
chr2 1441329 0.60% 6264
chr3 948142 0.48% 4153
chr4 653280 0.34% 2838
chr5 814324 0.45% 3543
chr6 880581 0.52% 3829
chr7 921592 0.58% 4014
chr8 773642 0.53% 3499
chr9 903010 0.65% 3930
chr10 872476 0.65% 3862
chr11 1134823 0.84% 4862
chr12 861151 0.65% 3689
chr13 326875 0.29% 1423
chr14 699377 0.65% 3053
chr15 678800 0.67% 2995
chr16 792663 0.88% 3469
chr17 1217200 1.46% 5307
chr18 315679 0.39% 1362
chr19 1008526 1.72% 4326
chr20 563733 0.87% 2507
chr21 300742 0.64% 1292
chr22 682469 1.34% 3007
chrX 446324 0.29% 1885
chrY 15675 0.03% 69
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 82996 1 1680 230.03 200
global segment-length histogram

Files

Filename Size md5
ENCFF463WIA.bed.gz 882.96 KB 5ef8ac691bc506a00f4fd71c9b1cd9a1
ENCFF463WIA.tabix.bed.gz 827.65 KB c090e6e9b2102403300256c5c2a440ef
ENCFF463WIA.tabix.bed.gz.tbi 250.75 KB bd4cb38ab599b5b8ee80240db577f950
genomic_resource.yaml 1.79 KB 9a1fad69c6dbdccf1aadbc5a141dcf01
statistics/