Resource
| Id | DNase-seq/ENCSR006XFA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR006XFA [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (82 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (82 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF497WHX|/files/ENCFF497WHX/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR006XFA | float |
DNase-seq_ENCSR006XFA |
DNase-seq ENCSR006XFA [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (82 years)"]
|
 |
[0.124, 17.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 6307371 | 0.20% | 35521 |
| chr1 | 617046 | 0.25% | 3464 |
| chr2 | 482420 | 0.20% | 2754 |
| chr3 | 339244 | 0.17% | 1902 |
| chr4 | 221055 | 0.12% | 1264 |
| chr5 | 307840 | 0.17% | 1766 |
| chr6 | 283125 | 0.17% | 1630 |
| chr7 | 325652 | 0.20% | 1821 |
| chr8 | 300337 | 0.21% | 1702 |
| chr9 | 297827 | 0.22% | 1677 |
| chr10 | 312968 | 0.23% | 1789 |
| chr11 | 366609 | 0.27% | 2109 |
| chr12 | 287907 | 0.22% | 1603 |
| chr13 | 111687 | 0.10% | 631 |
| chr14 | 213541 | 0.20% | 1193 |
| chr15 | 192681 | 0.19% | 1079 |
| chr16 | 229172 | 0.25% | 1270 |
| chr17 | 326762 | 0.39% | 1852 |
| chr18 | 95449 | 0.12% | 576 |
| chr19 | 367329 | 0.63% | 1923 |
| chr20 | 186363 | 0.29% | 1067 |
| chr21 | 88175 | 0.19% | 483 |
| chr22 | 181024 | 0.36% | 1041 |
| chrX | 172556 | 0.11% | 920 |
| chrY | 602 | <0.01% | 5 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 35521 | 1 | 780 | 177.57 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF580YEP.bed.gz | 387.79 KB | 863d328516ed56dad0cac06301bf5b50 |
| ENCFF580YEP.tabix.bed.gz | 350.46 KB | 2fae3a7e6d419c864aa77fc1e80b115a |
| ENCFF580YEP.tabix.bed.gz.tbi | 189.76 KB | e57c39825c5cdc635a87463ed333338e |
| genomic_resource.yaml | 2.08 KB | 7a37af9a7e356e3b49d2414e1c383015 |
| statistics/ |