Resource
| Id | DNase-seq/ENCSR006IJP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR006IJP [biosample_summary="Homo sapiens lung tissue embryo (112 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: embryo (112 days) output_type: peaks audit_warning: Alignment file {ENCFF588PJU|/files/ENCFF588PJU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 35478179 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR006IJP | float |
DNase-seq_ENCSR006IJP |
DNase-seq ENCSR006IJP [biosample_summary="Homo sapiens lung tissue embryo (112 days)"]
|
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[0.226, 18.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11855176 | 0.37% | 62293 |
| chr1 | 1056372 | 0.42% | 5507 |
| chr2 | 957094 | 0.40% | 5075 |
| chr3 | 811986 | 0.41% | 4241 |
| chr4 | 639823 | 0.34% | 3352 |
| chr5 | 682633 | 0.38% | 3586 |
| chr6 | 739305 | 0.43% | 3841 |
| chr7 | 620047 | 0.39% | 3250 |
| chr8 | 562305 | 0.39% | 2972 |
| chr9 | 483525 | 0.35% | 2548 |
| chr10 | 572978 | 0.43% | 2991 |
| chr11 | 594870 | 0.44% | 3151 |
| chr12 | 601551 | 0.45% | 3144 |
| chr13 | 342877 | 0.30% | 1797 |
| chr14 | 376256 | 0.35% | 1974 |
| chr15 | 385662 | 0.38% | 2028 |
| chr16 | 342302 | 0.38% | 1837 |
| chr17 | 448472 | 0.54% | 2354 |
| chr18 | 282333 | 0.35% | 1493 |
| chr19 | 409387 | 0.70% | 2065 |
| chr20 | 297657 | 0.46% | 1586 |
| chr21 | 134301 | 0.29% | 716 |
| chr22 | 182299 | 0.36% | 981 |
| chrX | 330981 | 0.21% | 1803 |
| chrY | 160 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 62293 | 2 | 926 | 190.31 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF266NXE.bed.gz | 658.66 KB | f18f6f50a907d0712c65cfaa08a94006 |
| ENCFF266NXE.tabix.bed.gz | 590.26 KB | 5b78a48654902378516f53d8e0391541 |
| ENCFF266NXE.tabix.bed.gz.tbi | 347.53 KB | e1716974c8c8ee14a391b93d552e84f4 |
| genomic_resource.yaml | 1.79 KB | f5d5c9a3d946b57ad314e749ba4c17d8 |
| statistics/ |
