Resource

Id DNase-seq/ENCSR006IJPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR006IJP [biosample_summary="Homo sapiens lung tissue embryo (112 days)"]
Description
Labels
  • accession: ENCSR006IJP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002048/
  • biosample_summary: Homo sapiens lung tissue embryo (112 days)
  • date_created: 2015-09-16T21:42:44.242621+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR006IJP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: embryo (112 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR006IJP float

DNase-seq_ENCSR006IJP

DNase-seq ENCSR006IJP [biosample_summary="Homo sapiens lung tissue embryo (112 days)"]
HISTOGRAM FOR DNase-seq_ENCSR006IJP [0.226, 18.8]
n
11,855,176
mean
2.46
sd
1.87

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 118551760.37% 62293
chr1 1056372 0.42% 5507
chr2 957094 0.40% 5075
chr3 811986 0.41% 4241
chr4 639823 0.34% 3352
chr5 682633 0.38% 3586
chr6 739305 0.43% 3841
chr7 620047 0.39% 3250
chr8 562305 0.39% 2972
chr9 483525 0.35% 2548
chr10 572978 0.43% 2991
chr11 594870 0.44% 3151
chr12 601551 0.45% 3144
chr13 342877 0.30% 1797
chr14 376256 0.35% 1974
chr15 385662 0.38% 2028
chr16 342302 0.38% 1837
chr17 448472 0.54% 2354
chr18 282333 0.35% 1493
chr19 409387 0.70% 2065
chr20 297657 0.46% 1586
chr21 134301 0.29% 716
chr22 182299 0.36% 981
chrX 330981 0.21% 1803
chrY 160 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 62293 2 926 190.31 180
global segment-length histogram

Files

Filename Size md5
ENCFF266NXE.bed.gz 658.66 KB f18f6f50a907d0712c65cfaa08a94006
ENCFF266NXE.tabix.bed.gz 590.26 KB 5b78a48654902378516f53d8e0391541
ENCFF266NXE.tabix.bed.gz.tbi 347.53 KB e1716974c8c8ee14a391b93d552e84f4
genomic_resource.yaml 1.79 KB f5d5c9a3d946b57ad314e749ba4c17d8
statistics/