Resource

Id DNase-seq/ENCSR006DKFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR006DKF [biosample_summary="Homo sapiens brain microvascular endothelial cell"]
Description
Labels
  • accession: ENCSR006DKF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_2000044/
  • biosample_summary: Homo sapiens brain microvascular endothelial cell
  • date_created: 2019-10-07T16:28:26.476889+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR006DKF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR006DKF float

DNase-seq_ENCSR006DKF

DNase-seq ENCSR006DKF [biosample_summary="Homo sapiens brain microvascular endothelial cell"]
HISTOGRAM FOR DNase-seq_ENCSR006DKF [0.0809, 31.8]
n
28,483,757
mean
1.98
sd
2.16

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 284837570.89% 152291
chr1 2558263 1.03% 13631
chr2 2378378 0.98% 12700
chr3 1933831 0.98% 10344
chr4 1507669 0.79% 8220
chr5 1666763 0.92% 8904
chr6 1811771 1.06% 9671
chr7 1495432 0.94% 8003
chr8 1376501 0.95% 7340
chr9 1214045 0.88% 6495
chr10 1391148 1.04% 7431
chr11 1431080 1.06% 7657
chr12 1432160 1.07% 7700
chr13 830058 0.73% 4462
chr14 828334 0.77% 4439
chr15 918550 0.90% 4902
chr16 876030 0.97% 4638
chr17 1090892 1.31% 5758
chr18 637023 0.79% 3457
chr19 889728 1.52% 4587
chr20 693269 1.08% 3721
chr21 328337 0.70% 1749
chr22 455164 0.90% 2423
chrX 738484 0.47% 4054
chrY 847 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 152291 1 740 187.04 183
global segment-length histogram

Files

Filename Size md5
ENCFF791XKF.bed.gz 1.62 MB cd548e95ac9b6368d53cc326c51b823e
ENCFF791XKF.tabix.bed.gz 1.47 MB 36cfd2de00bc42221ab717902927a03c
ENCFF791XKF.tabix.bed.gz.tbi 564.53 KB 30f770bdc5346306cd9a1664e2456c1d
genomic_resource.yaml 1.16 KB 95d6b7a2dd719595d441e7b5736e9a2d
statistics/