Resource

Id DNase-seq/ENCSR000FFJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000FFJ [biosample_summary="Homo sapiens SJCRH30"]
Description
Labels
  • accession: ENCSR000FFJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005722/
  • biosample_summary: Homo sapiens SJCRH30
  • date_created: 2013-11-15T05:58:39.836840+00:00
  • date_released: 2015-08-31
  • doi: 10.17989/ENCSR000FFJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000FFJ float

DNase-seq_ENCSR000FFJ
DNase-seq ENCSR000FFJ [biosample_summary="Homo sapiens SJCRH30"]
 HISTOGRAM FOR DNase-seq_ENCSR000FFJ [1, 7.73e+04]
n
47,532,376
mean
337
sd
677

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 475323761.48% 316483
chr1 4262822 1.71% 28386
chr2 4140890 1.71% 27571
chr3 2973446 1.50% 19797
chr4 2756188 1.45% 18342
chr5 2703180 1.49% 18000
chr6 2783539 1.63% 18533
chr7 2548567 1.60% 16971
chr8 2001663 1.38% 13331
chr9 2159153 1.56% 14375
chr10 2152142 1.61% 14322
chr11 2191513 1.62% 14593
chr12 2321480 1.74% 15461
chr13 1483106 1.30% 9871
chr14 1509211 1.41% 10048
chr15 1545583 1.52% 10298
chr16 1430203 1.58% 9526
chr17 1867881 2.24% 12439
chr18 937011 1.17% 6236
chr19 1334525 2.28% 8886
chr20 1331243 2.07% 8872
chr21 578460 1.24% 3852
chr22 818061 1.61% 5442
chrX 1659159 1.06% 11043
chrY 43350 0.08% 288
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 316483 8 450 150.19 150
global segment-length histogram

Files

Filename Size md5
ENCFF669ZOP.bed.gz 3.03 MB d1de847b587b125cea3cc6f854b65818
ENCFF669ZOP.tabix.bed.gz 2.61 MB 9e4c1256898b17d59d6499a3b9d7fa1e
ENCFF669ZOP.tabix.bed.gz.tbi 829.28 KB ae196bda90fbb49a9e90c53e180f5809
genomic_resource.yaml 1.26 KB 143cbb735ec1504e0369213173ae9218
statistics/