Resource

Id DNase-seq/ENCSR000FDIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000FDI [biosample_summary="Homo sapiens HT1080"]
Description
Labels
  • accession: ENCSR000FDI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002059/
  • biosample_summary: Homo sapiens HT1080
  • date_created: 2013-11-15T05:58:39.289038+00:00
  • date_released: 2015-03-31
  • doi: 10.17989/ENCSR000FDI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000FDI float

DNase-seq_ENCSR000FDI
DNase-seq ENCSR000FDI [biosample_summary="Homo sapiens HT1080"]
 HISTOGRAM FOR DNase-seq_ENCSR000FDI [0.0221, 35.6]
n
43,245,880
mean
1.47
sd
2.43

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 432458801.34% 197343
chr1 3972678 1.60% 18035
chr2 3565936 1.47% 16275
chr3 3197315 1.61% 14555
chr4 2470646 1.30% 11377
chr5 2565865 1.41% 11673
chr6 2667336 1.56% 12053
chr7 2137530 1.34% 9835
chr8 2101953 1.45% 9699
chr9 1764639 1.28% 8116
chr10 2036783 1.52% 9285
chr11 2170783 1.61% 9803
chr12 2115858 1.59% 9629
chr13 1291139 1.13% 5943
chr14 1378056 1.29% 6255
chr15 1368378 1.34% 6226
chr16 1179178 1.31% 5399
chr17 1532506 1.84% 6908
chr18 1063545 1.32% 4910
chr19 1034011 1.76% 4601
chr20 1057536 1.64% 4818
chr21 461932 0.99% 2155
chr22 640056 1.26% 2927
chrX 1392127 0.89% 6483
chrY 80094 0.14% 383
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 197343 1 1000 219.14 240
global segment-length histogram

Files

Filename Size md5
ENCFF385NWO.bed.gz 2.14 MB d3741d29d232f64216f0a874526c3041
ENCFF385NWO.tabix.bed.gz 1.95 MB eaafd241fb878550f4b7d25ad8969c8d
ENCFF385NWO.tabix.bed.gz.tbi 703.02 KB d391f2c4eb4fde511e651fa84efa0916
genomic_resource.yaml 1.7 KB 161f9db8203e6e0cc54a770fb732849c
statistics/