Resource
| Id | DNase-seq/ENCSR000EQN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EQN [biosample_summary="Homo sapiens WI38 stably expressing RAF1"] |
| Description |
status: released biological_replicates: Rep 2 summary: stably expressing RAF1 output_type: peaks audit_warning: Alignment file {ENCFF910RBA|/files/ENCFF910RBA/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 20044972 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF759BTN|/files/ENCFF759BTN/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 21109076 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EQN | float |
DNase-seq_ENCSR000EQN |
DNase-seq ENCSR000EQN [biosample_summary="Homo sapiens WI38 stably expressing RAF1"]
|
 |
[0.238, 37.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 10937105 | 0.34% | 61481 |
| chr1 | 999784 | 0.40% | 5669 |
| chr2 | 910474 | 0.38% | 5118 |
| chr3 | 697712 | 0.35% | 3945 |
| chr4 | 522214 | 0.27% | 2979 |
| chr5 | 620225 | 0.34% | 3498 |
| chr6 | 670572 | 0.39% | 3791 |
| chr7 | 550413 | 0.35% | 3115 |
| chr8 | 518280 | 0.36% | 2923 |
| chr9 | 456754 | 0.33% | 2538 |
| chr10 | 517971 | 0.39% | 2952 |
| chr11 | 591705 | 0.44% | 3277 |
| chr12 | 552521 | 0.41% | 3134 |
| chr13 | 294261 | 0.26% | 1660 |
| chr14 | 333437 | 0.31% | 1854 |
| chr15 | 360696 | 0.35% | 2024 |
| chr16 | 369958 | 0.41% | 2069 |
| chr17 | 481955 | 0.58% | 2677 |
| chr18 | 243545 | 0.30% | 1368 |
| chr19 | 402166 | 0.69% | 2132 |
| chr20 | 266347 | 0.41% | 1497 |
| chr21 | 126267 | 0.27% | 692 |
| chr22 | 197403 | 0.39% | 1120 |
| chrX | 252198 | 0.16% | 1447 |
| chrY | 247 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 61481 | 2 | 800 | 177.89 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF161FTX.bed.gz | 650.52 KB | 31bf7c2306723af2886e093eb386514c |
| ENCFF161FTX.tabix.bed.gz | 580.51 KB | db3884bdf2e64358cdbc2a8b4cf5c7b4 |
| ENCFF161FTX.tabix.bed.gz.tbi | 330.23 KB | 663a0773346a2b54184e86492e0829c4 |
| genomic_resource.yaml | 2.41 KB | bdccdf26dbbe1e4c7637db47d3c44328 |
| statistics/ |