Resource

Id DNase-seq/ENCSR000EQLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EQL [biosample_summary="Homo sapiens WERI-Rb-1"]
Description
Labels
  • accession: ENCSR000EQL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005715/
  • biosample_summary: Homo sapiens WERI-Rb-1
  • date_created: 2013-12-12T07:10:13.500146+00:00
  • date_released: 2011-05-04
  • doi: 10.17989/ENCSR000EQL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EQL float

DNase-seq_ENCSR000EQL

DNase-seq ENCSR000EQL [biosample_summary="Homo sapiens WERI-Rb-1"]
HISTOGRAM FOR DNase-seq_ENCSR000EQL [3, 3.42e+03]
n
20,027,521
mean
66.5
sd
80.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 200275210.62% 133321
chr1 1932039 0.78% 12870
chr2 1691745 0.70% 11268
chr3 1330907 0.67% 8853
chr4 1245306 0.65% 8287
chr5 1191089 0.66% 7927
chr6 1276841 0.75% 8494
chr7 1038293 0.65% 6904
chr8 971046 0.67% 6466
chr9 905331 0.65% 6025
chr10 864332 0.65% 5750
chr11 976635 0.72% 6504
chr12 962357 0.72% 6408
chr13 582432 0.51% 3876
chr14 617461 0.58% 4111
chr15 599464 0.59% 3991
chr16 586018 0.65% 3905
chr17 798593 0.96% 5322
chr18 518340 0.64% 3450
chr19 482250 0.82% 3213
chr20 435600 0.68% 2898
chr21 220800 0.47% 1469
chr22 307640 0.61% 2046
chrX 490002 0.31% 3264
chrY 3000 0.01% 20
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 133321 20 450 150.22 150
global segment-length histogram

Files

Filename Size md5
ENCFF362PAJ.bed.gz 1.26 MB d4fa751b3a247a854656092727648c55
ENCFF362PAJ.tabix.bed.gz 1.09 MB 770e14e2ac994cef12831a894e69a390
ENCFF362PAJ.tabix.bed.gz.tbi 578.93 KB 3f656da8c52b1fb638d33fa447ae6219
genomic_resource.yaml 1.26 KB 3725ee4b7fa6a3b56d29368e6e8e3fb5
statistics/