Resource
| Id | DNase-seq/ENCSR000EQK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EQK [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (28 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (28 years) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF641LOI|/files/ENCFF641LOI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.22. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EQK | float |
DNase-seq_ENCSR000EQK |
DNase-seq ENCSR000EQK [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (28 years)"]
|
 |
[0.0971, 17.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11448841 | 0.36% | 52204 |
| chr1 | 1139141 | 0.46% | 5115 |
| chr2 | 892619 | 0.37% | 4027 |
| chr3 | 746545 | 0.38% | 3360 |
| chr4 | 496006 | 0.26% | 2223 |
| chr5 | 570732 | 0.31% | 2560 |
| chr6 | 759374 | 0.44% | 3378 |
| chr7 | 539454 | 0.34% | 2483 |
| chr8 | 446182 | 0.31% | 2083 |
| chr9 | 440827 | 0.32% | 2058 |
| chr10 | 509909 | 0.38% | 2368 |
| chr11 | 580112 | 0.43% | 2658 |
| chr12 | 605216 | 0.45% | 2671 |
| chr13 | 287226 | 0.25% | 1270 |
| chr14 | 406417 | 0.38% | 1823 |
| chr15 | 379018 | 0.37% | 1754 |
| chr16 | 387416 | 0.43% | 1801 |
| chr17 | 556507 | 0.67% | 2582 |
| chr18 | 213848 | 0.27% | 969 |
| chr19 | 550550 | 0.94% | 2532 |
| chr20 | 275166 | 0.43% | 1321 |
| chr21 | 133978 | 0.29% | 618 |
| chr22 | 221598 | 0.44% | 1049 |
| chrX | 290886 | 0.19% | 1415 |
| chrY | 20114 | 0.04% | 86 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 52204 | 2 | 1040 | 219.31 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF439DVC.bed.gz | 544.34 KB | 4b96d9702d73b8a19696a4f2bb54b59b |
| ENCFF439DVC.tabix.bed.gz | 503.02 KB | 7f1d745508fc54a3d6633d2e3908087b |
| ENCFF439DVC.tabix.bed.gz.tbi | 256.96 KB | 88c5801b40aa7f13df6d822472a87a45 |
| genomic_resource.yaml | 2.15 KB | e5db4549b08eff9baeff903a3c5b8b88 |
| statistics/ |