Resource

Id DNase-seq/ENCSR000EQJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EQJ [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell female adult (35 years)"]
Description
Labels
  • accession: ENCSR000EQJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000792/
  • biosample_summary: Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell female adult (35 years)
  • date_created: 2013-12-12T07:10:11.334760+00:00
  • date_released: 2012-07-23
  • doi: 10.17989/ENCSR000EQJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (35 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EQJ float

DNase-seq_ENCSR000EQJ
DNase-seq ENCSR000EQJ [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell female adult (35 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR000EQJ [0.0386, 50.1]
n
24,265,947
mean
2.9
sd
5.28

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 242659470.75% 125476
chr1 2341718 0.94% 12078
chr2 1927099 0.80% 10008
chr3 1561109 0.79% 8098
chr4 999320 0.53% 5196
chr5 1173245 0.65% 6129
chr6 1535875 0.90% 7815
chr7 1136205 0.71% 5915
chr8 1009422 0.70% 5252
chr9 983625 0.71% 5132
chr10 1164540 0.87% 5997
chr11 1186203 0.88% 6132
chr12 1230011 0.92% 6324
chr13 573291 0.50% 2945
chr14 873204 0.82% 4486
chr15 822399 0.81% 4262
chr16 847261 0.94% 4363
chr17 1194564 1.43% 6145
chr18 465915 0.58% 2455
chr19 1010967 1.72% 5135
chr20 615272 0.95% 3222
chr21 295620 0.63% 1533
chr22 506392 1.00% 2639
chrX 811330 0.52% 4205
chrY 1360 <0.01% 10
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 125476 2 1160 193.39 180
global segment-length histogram

Files

Filename Size md5
ENCFF825KFE.bed.gz 1.35 MB b3e8d98dd13f33d92ea3960317708435
ENCFF825KFE.tabix.bed.gz 1.25 MB e7d9600f26d8188c7c47dacd6b136236
ENCFF825KFE.tabix.bed.gz.tbi 446.57 KB 0a3efa0a5fb3244fa727b076cadbf04e
genomic_resource.yaml 1.34 KB 0d8a7e2720679989837f78b4888df71c
statistics/