Resource

Id DNase-seq/ENCSR000EQFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EQF [biosample_summary="Homo sapiens T-helper 17 cell"]
Description
Labels
  • accession: ENCSR000EQF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000899/
  • biosample_summary: Homo sapiens T-helper 17 cell
  • date_created: 2013-12-12T07:10:05.822454+00:00
  • date_released: 2012-07-23
  • doi: 10.17989/ENCSR000EQF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EQF float

DNase-seq_ENCSR000EQF

DNase-seq ENCSR000EQF [biosample_summary="Homo sapiens T-helper 17 cell"]
HISTOGRAM FOR DNase-seq_ENCSR000EQF [0.0342, 57.9]
n
14,139,880
mean
2.33
sd
3.67

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 141398800.44% 74321
chr1 1334208 0.54% 7024
chr2 1146270 0.47% 6043
chr3 926507 0.47% 4853
chr4 597336 0.31% 3169
chr5 710246 0.39% 3727
chr6 976583 0.57% 5074
chr7 665461 0.42% 3531
chr8 615257 0.42% 3232
chr9 581602 0.42% 3070
chr10 693559 0.52% 3663
chr11 645535 0.48% 3427
chr12 729571 0.55% 3840
chr13 345144 0.30% 1804
chr14 501161 0.47% 2613
chr15 466394 0.46% 2475
chr16 495400 0.55% 2581
chr17 679890 0.82% 3551
chr18 259646 0.32% 1377
chr19 589184 1.01% 3005
chr20 336517 0.52% 1785
chr21 165180 0.35% 863
chr22 270397 0.53% 1438
chrX 408141 0.26% 2171
chrY 691 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 74321 2 660 190.25 200
global segment-length histogram

Files

Filename Size md5
ENCFF047UUQ.bed.gz 832.47 KB 79c2b996a41269190d45d0cf11f36c78
ENCFF047UUQ.tabix.bed.gz 758.38 KB 1d121223d8eac015731c0ba57b674ca4
ENCFF047UUQ.tabix.bed.gz.tbi 316.2 KB 1eb417f0d5d868dea431b73825dd1933
genomic_resource.yaml 1.95 KB d67b90cf2483e86ee6147c54b8a1091f
statistics/