Resource

Id DNase-seq/ENCSR000EQAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EQA [biosample_summary="Homo sapiens skeletal muscle cell"]
Description
Labels
  • accession: ENCSR000EQA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000188/
  • biosample_summary: Homo sapiens skeletal muscle cell
  • date_created: 2013-12-18T17:58:38.860886+00:00
  • date_released: 2010-12-14
  • doi: 10.17989/ENCSR000EQA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EQA float

DNase-seq_ENCSR000EQA
DNase-seq ENCSR000EQA [biosample_summary="Homo sapiens skeletal muscle cell"]
 HISTOGRAM FOR DNase-seq_ENCSR000EQA [5, 3.64e+04]
n
74,356,247
mean
558
sd
1.38e+03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 743562472.31% 495350
chr1 6527210 2.62% 43479
chr2 6441888 2.66% 42916
chr3 5276328 2.66% 35161
chr4 4632806 2.44% 30863
chr5 4539144 2.50% 30235
chr6 4705372 2.75% 31353
chr7 3803146 2.39% 25339
chr8 3785529 2.61% 25215
chr9 3171403 2.29% 21125
chr10 3453453 2.58% 23005
chr11 3518395 2.60% 23441
chr12 3622605 2.72% 24133
chr13 2524554 2.21% 16821
chr14 2244900 2.10% 14953
chr15 2282096 2.24% 15201
chr16 1903469 2.11% 12675
chr17 2457682 2.95% 16376
chr18 1883779 2.34% 12554
chr19 1500132 2.56% 9997
chr20 1647804 2.56% 10979
chr21 915901 1.96% 6102
chr22 994200 1.96% 6625
chrX 2393051 1.53% 15930
chrY 131400 0.23% 872
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 495350 1 300 150.11 150
global segment-length histogram

Files

Filename Size md5
ENCFF567KMJ.bed.gz 4.67 MB 4e48bfafbc24907baa9413685dec5a3d
ENCFF567KMJ.tabix.bed.gz 4.07 MB 57f4c03a1ee7d63f2e4b2e7393ad2b5d
ENCFF567KMJ.tabix.bed.gz.tbi 946.3 KB ed1700c354e1b5e6a8bf14228eec10c4
genomic_resource.yaml 1.92 KB e0da094cbca3a6aa40e91b68036553ff
statistics/