Resource
| Id | DNase-seq/ENCSR000EPW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EPW [biosample_summary="Homo sapiens epithelial cell of proximal tubule"] |
| Description |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_warning: Alignment file {ENCFF230GUV|/files/ENCFF230GUV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 22557891 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF384GNY|/files/ENCFF384GNY/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 27399352 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EPW | float |
DNase-seq_ENCSR000EPW |
DNase-seq ENCSR000EPW [biosample_summary="Homo sapiens epithelial cell of proximal tubule"]
|
 |
[0.221, 22.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11886032 | 0.37% | 65027 |
| chr1 | 1075358 | 0.43% | 5833 |
| chr2 | 1036694 | 0.43% | 5664 |
| chr3 | 863852 | 0.44% | 4733 |
| chr4 | 694070 | 0.36% | 3804 |
| chr5 | 710175 | 0.39% | 3900 |
| chr6 | 762474 | 0.45% | 4163 |
| chr7 | 649106 | 0.41% | 3548 |
| chr8 | 583928 | 0.40% | 3164 |
| chr9 | 512916 | 0.37% | 2792 |
| chr10 | 584243 | 0.44% | 3218 |
| chr11 | 574204 | 0.43% | 3124 |
| chr12 | 596868 | 0.45% | 3262 |
| chr13 | 357325 | 0.31% | 1958 |
| chr14 | 368018 | 0.34% | 2016 |
| chr15 | 360166 | 0.35% | 1961 |
| chr16 | 311968 | 0.35% | 1723 |
| chr17 | 395446 | 0.47% | 2157 |
| chr18 | 297642 | 0.37% | 1658 |
| chr19 | 302502 | 0.52% | 1615 |
| chr20 | 273903 | 0.43% | 1509 |
| chr21 | 130127 | 0.28% | 715 |
| chr22 | 157638 | 0.31% | 874 |
| chrX | 268351 | 0.17% | 1522 |
| chrY | 19058 | 0.03% | 114 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 65027 | 1 | 820 | 182.79 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF948XMS.bed.gz | 692.45 KB | 572e5ceabc6fda124bffb624e45bf1bd |
| ENCFF948XMS.tabix.bed.gz | 613.4 KB | 1ecb7a3948e20489b100735ba7093a46 |
| ENCFF948XMS.tabix.bed.gz.tbi | 361.02 KB | a3f0a392b355cc66e3784ac9f97bf677 |
| genomic_resource.yaml | 2.43 KB | 586f3a67157c881e4b3d65d756cc1d9b |
| statistics/ |