Resource
| Id | DNase-seq/ENCSR000EPT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EPT [biosample_summary="Homo sapiens Panc1"] |
| Description |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN611PVG|/analyses/ENCAN611PVG/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF585MZD|/files/ENCFF585MZD/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 26246147 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF770RAW|/files/ENCFF770RAW/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 26560893 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF048ENW|/files/ENCFF048ENW/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 26362336 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF375IJW|/files/ENCFF375IJW/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 26077948 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EPT | float |
DNase-seq_ENCSR000EPT |
DNase-seq ENCSR000EPT [biosample_summary="Homo sapiens Panc1"]
|
 |
[3, 1.68e+04] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7985819 | 0.25% | 53073 |
| chr1 | 802433 | 0.32% | 5337 |
| chr2 | 647110 | 0.27% | 4300 |
| chr3 | 500997 | 0.25% | 3332 |
| chr4 | 328207 | 0.17% | 2182 |
| chr5 | 504011 | 0.28% | 3343 |
| chr6 | 538342 | 0.32% | 3577 |
| chr7 | 517047 | 0.32% | 3438 |
| chr8 | 327854 | 0.23% | 2180 |
| chr9 | 263471 | 0.19% | 1751 |
| chr10 | 397553 | 0.30% | 2643 |
| chr11 | 453721 | 0.34% | 3017 |
| chr12 | 384549 | 0.29% | 2558 |
| chr13 | 147890 | 0.13% | 982 |
| chr14 | 220024 | 0.21% | 1460 |
| chr15 | 256217 | 0.25% | 1700 |
| chr16 | 259657 | 0.29% | 1726 |
| chr17 | 321708 | 0.39% | 2137 |
| chr18 | 163303 | 0.20% | 1083 |
| chr19 | 308356 | 0.53% | 2054 |
| chr20 | 223933 | 0.35% | 1485 |
| chr21 | 75750 | 0.16% | 505 |
| chr22 | 115579 | 0.23% | 771 |
| chrX | 227507 | 0.15% | 1508 |
| chrY | 600 | <0.01% | 4 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 53073 | 31 | 450 | 150.47 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF115TDX.bed.gz | 516.87 KB | d43cc9a09d4a82a93e719bc01bf69972 |
| ENCFF115TDX.tabix.bed.gz | 443.32 KB | 807fd3110521d94916d904edf52536c9 |
| ENCFF115TDX.tabix.bed.gz.tbi | 282.27 KB | 96f76d9bd8f64b53fda2bc90a7459cab |
| genomic_resource.yaml | 3.73 KB | cd41e2bd1ca350b536ca8d3c43f95cc4 |
| statistics/ |