Resource

Id DNase-seq/ENCSR000EPScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EPS [biosample_summary="Homo sapiens NT2/D1"]
Description
Labels
  • accession: ENCSR000EPS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005236/
  • biosample_summary: Homo sapiens NT2/D1
  • date_created: 2013-12-12T07:09:50.532668+00:00
  • date_released: 2011-10-19
  • doi: 10.17989/ENCSR000EPS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EPS float

DNase-seq_ENCSR000EPS

DNase-seq ENCSR000EPS [biosample_summary="Homo sapiens NT2/D1"]
HISTOGRAM FOR DNase-seq_ENCSR000EPS [3, 3.31e+03]
n
16,026,256
mean
48.6
sd
50.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 160262560.50% 106627
chr1 1681869 0.68% 11193
chr2 1358605 0.56% 9039
chr3 1102500 0.56% 7337
chr4 763123 0.40% 5078
chr5 797717 0.44% 5304
chr6 794505 0.47% 5288
chr7 935267 0.59% 6217
chr8 703991 0.49% 4678
chr9 692799 0.50% 4607
chr10 656328 0.49% 4367
chr11 827051 0.61% 5506
chr12 931843 0.70% 6204
chr13 408240 0.36% 2711
chr14 436719 0.41% 2907
chr15 488980 0.48% 3251
chr16 560981 0.62% 3733
chr17 545100 0.65% 3631
chr18 310650 0.39% 2067
chr19 550200 0.94% 3664
chr20 415900 0.65% 2769
chr21 212250 0.45% 1414
chr22 233250 0.46% 1553
chrX 590188 0.38% 3922
chrY 28200 0.05% 187
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 106627 70 450 150.3 150
global segment-length histogram

Files

Filename Size md5
ENCFF506YRM.bed.gz 1.0 MB 6d0be0927ee8646bc875ad41f550e77c
ENCFF506YRM.tabix.bed.gz 885.21 KB 273654ea1e44a6642bb54c2f5e7c4ea3
ENCFF506YRM.tabix.bed.gz.tbi 522.76 KB 3bf278e9cde980a17405fda32823df96
genomic_resource.yaml 1.25 KB 0b05bd19284e1ddfd2c45f80e8ebfcef
statistics/