Resource
| Id | DNase-seq/ENCSR000EPS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EPS [biosample_summary="Homo sapiens NT2/D1"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN928TSS|/analyses/ENCAN928TSS/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EPS | float |
DNase-seq_ENCSR000EPS |
DNase-seq ENCSR000EPS [biosample_summary="Homo sapiens NT2/D1"]
|
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[3, 3.31e+03] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 16026256 | 0.50% | 106627 |
| chr1 | 1681869 | 0.68% | 11193 |
| chr2 | 1358605 | 0.56% | 9039 |
| chr3 | 1102500 | 0.56% | 7337 |
| chr4 | 763123 | 0.40% | 5078 |
| chr5 | 797717 | 0.44% | 5304 |
| chr6 | 794505 | 0.47% | 5288 |
| chr7 | 935267 | 0.59% | 6217 |
| chr8 | 703991 | 0.49% | 4678 |
| chr9 | 692799 | 0.50% | 4607 |
| chr10 | 656328 | 0.49% | 4367 |
| chr11 | 827051 | 0.61% | 5506 |
| chr12 | 931843 | 0.70% | 6204 |
| chr13 | 408240 | 0.36% | 2711 |
| chr14 | 436719 | 0.41% | 2907 |
| chr15 | 488980 | 0.48% | 3251 |
| chr16 | 560981 | 0.62% | 3733 |
| chr17 | 545100 | 0.65% | 3631 |
| chr18 | 310650 | 0.39% | 2067 |
| chr19 | 550200 | 0.94% | 3664 |
| chr20 | 415900 | 0.65% | 2769 |
| chr21 | 212250 | 0.45% | 1414 |
| chr22 | 233250 | 0.46% | 1553 |
| chrX | 590188 | 0.38% | 3922 |
| chrY | 28200 | 0.05% | 187 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 106627 | 70 | 450 | 150.3 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF506YRM.bed.gz | 1.0 MB | 6d0be0927ee8646bc875ad41f550e77c |
| ENCFF506YRM.tabix.bed.gz | 885.21 KB | 273654ea1e44a6642bb54c2f5e7c4ea3 |
| ENCFF506YRM.tabix.bed.gz.tbi | 522.76 KB | 3bf278e9cde980a17405fda32823df96 |
| genomic_resource.yaml | 1.25 KB | 0b05bd19284e1ddfd2c45f80e8ebfcef |
| statistics/ |
