Resource

Id DNase-seq/ENCSR000EPOcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EPO [biosample_summary="Homo sapiens fibroblast of dermis female adult"]
Description
Labels
  • accession: ENCSR000EPO
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002551/
  • biosample_summary: Homo sapiens fibroblast of dermis female adult
  • date_created: 2014-01-17T20:40:16.066133+00:00
  • date_released: 2010-12-14
  • doi: 10.17989/ENCSR000EPO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female adult
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EPO float

DNase-seq_ENCSR000EPO
DNase-seq ENCSR000EPO [biosample_summary="Homo sapiens fibroblast of dermis female adult"]
 HISTOGRAM FOR DNase-seq_ENCSR000EPO [0.0304, 46.8]
n
52,299,213
mean
2.04
sd
3.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 522992131.63% 288346
chr1 4707360 1.89% 26015
chr2 4456716 1.84% 24659
chr3 3619345 1.83% 20031
chr4 2737055 1.44% 15298
chr5 3142712 1.73% 17260
chr6 3336694 1.95% 18342
chr7 2728806 1.71% 15197
chr8 2582398 1.78% 14234
chr9 2236282 1.62% 12281
chr10 2612176 1.95% 14342
chr11 2507049 1.86% 13719
chr12 2594780 1.95% 14322
chr13 1427838 1.25% 7893
chr14 1616872 1.51% 8876
chr15 1716524 1.68% 9460
chr16 1488990 1.65% 8200
chr17 1940289 2.33% 10578
chr18 1236182 1.54% 6855
chr19 1292813 2.21% 7007
chr20 1326493 2.06% 7243
chr21 635319 1.36% 3471
chr22 803098 1.58% 4383
chrX 1551714 0.99% 8668
chrY 1708 <0.01% 12
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 288346 1 780 181.38 180
global segment-length histogram

Files

Filename Size md5
ENCFF184KAM.bed.gz 3.09 MB 4ec44181338b033c07a1123343712ca5
ENCFF184KAM.tabix.bed.gz 2.81 MB baba87390b75f9be9f7e7357403b6d61
ENCFF184KAM.tabix.bed.gz.tbi 748.34 KB 40cd879f9436b56b02976da8a809c5dc
genomic_resource.yaml 1.79 KB 315e4f5c676f16e76c7122eb2fe2609a
statistics/