Resource
| Id | DNase-seq/ENCSR000EPL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EPL [biosample_summary="Homo sapiens NB4"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF885QIE|/files/ENCFF885QIE/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30005629 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EPL | float |
DNase-seq_ENCSR000EPL |
DNase-seq ENCSR000EPL [biosample_summary="Homo sapiens NB4"]
|
![]() |
[0.0207, 89.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 37719987 | 1.17% | 200158 |
| chr1 | 3396763 | 1.36% | 18013 |
| chr2 | 3116366 | 1.29% | 16699 |
| chr3 | 2206220 | 1.11% | 11911 |
| chr4 | 1617517 | 0.85% | 8775 |
| chr5 | 1936416 | 1.07% | 10422 |
| chr6 | 2280903 | 1.34% | 12029 |
| chr7 | 2009508 | 1.26% | 10747 |
| chr8 | 1558315 | 1.07% | 8421 |
| chr9 | 1596525 | 1.15% | 8401 |
| chr10 | 1759489 | 1.32% | 9398 |
| chr11 | 1908554 | 1.41% | 10001 |
| chr12 | 1968669 | 1.48% | 10401 |
| chr13 | 984212 | 0.86% | 5313 |
| chr14 | 1105585 | 1.03% | 5914 |
| chr15 | 1264481 | 1.24% | 6726 |
| chr16 | 1408206 | 1.56% | 7357 |
| chr17 | 1748597 | 2.10% | 8983 |
| chr18 | 731090 | 0.91% | 3941 |
| chr19 | 1592087 | 2.72% | 7976 |
| chr20 | 1148169 | 1.78% | 6053 |
| chr21 | 416722 | 0.89% | 2205 |
| chr22 | 775127 | 1.53% | 4026 |
| chrX | 1188850 | 0.76% | 6434 |
| chrY | 1616 | <0.01% | 12 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 200158 | 2 | 860 | 188.45 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF218WIP.bed.gz | 2.19 MB | bd1bc7878f1d778bf1f9693555c9accb |
| ENCFF218WIP.tabix.bed.gz | 2.0 MB | a19c905c7073e8a3119093687bcdd6c3 |
| ENCFF218WIP.tabix.bed.gz.tbi | 617.83 KB | 77ee4974a618ca162fadfd09ea9750cc |
| genomic_resource.yaml | 1.68 KB | 972765944729847f54de64ea7006f99d |
| statistics/ |
