Resource

Id DNase-seq/ENCSR000EPKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EPK [biosample_summary="Homo sapiens CD14-positive monocyte female"]
Description
Labels
  • accession: ENCSR000EPK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0001054/
  • biosample_summary: Homo sapiens CD14-positive monocyte female
  • date_created: 2013-12-12T07:09:41.670703+00:00
  • date_released: 2011-10-19
  • doi: 10.17989/ENCSR000EPK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female
  • status: released
  • submitter_comment: This originally had a replicate 1, however, the quality was found to be so low as to require it to be revoked.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EPK float

DNase-seq_ENCSR000EPK

DNase-seq ENCSR000EPK [biosample_summary="Homo sapiens CD14-positive monocyte female"]
HISTOGRAM FOR DNase-seq_ENCSR000EPK [0.118, 45.2]
n
16,401,507
mean
3.71
sd
5.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 164015070.51% 89100
chr1 1604305 0.64% 8725
chr2 1248824 0.52% 6794
chr3 1039764 0.52% 5673
chr4 660080 0.35% 3617
chr5 817924 0.45% 4487
chr6 987201 0.58% 5377
chr7 779835 0.49% 4244
chr8 698847 0.48% 3824
chr9 664652 0.48% 3640
chr10 774827 0.58% 4213
chr11 832282 0.62% 4487
chr12 853120 0.64% 4615
chr13 359405 0.31% 1964
chr14 522406 0.49% 2820
chr15 538666 0.53% 2932
chr16 573758 0.64% 3151
chr17 851331 1.02% 4609
chr18 315025 0.39% 1725
chr19 795902 1.36% 4123
chr20 465693 0.72% 2542
chr21 205804 0.44% 1111
chr22 347421 0.68% 1890
chrX 464153 0.30% 2535
chrY 282 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 89100 6 880 184.08 180
global segment-length histogram

Files

Filename Size md5
ENCFF771GZH.bed.gz 974.45 KB a7462fc04f4e38aa71f3291d5287a496
ENCFF771GZH.tabix.bed.gz 883.87 KB a898676d251a44be49f0e254754e33dc
ENCFF771GZH.tabix.bed.gz.tbi 348.24 KB 57379dafceb0d678481449f250006eb4
genomic_resource.yaml 1.26 KB b52e4cfbae26e5592419dc47cece0968
statistics/