Resource

Id DNase-seq/ENCSR000EPEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EPE [biosample_summary="Homo sapiens LHCN-M2"]
Description
Labels
  • accession: ENCSR000EPE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005714/
  • biosample_summary: Homo sapiens LHCN-M2
  • date_created: 2013-12-12T07:09:34.027991+00:00
  • date_released: 2012-06-12
  • doi: 10.17989/ENCSR000EPE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EPE float

DNase-seq_ENCSR000EPE
DNase-seq ENCSR000EPE [biosample_summary="Homo sapiens LHCN-M2"]
 HISTOGRAM FOR DNase-seq_ENCSR000EPE [0.0345, 37.3]
n
43,814,433
mean
2.09
sd
3.08

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 438144331.36% 227867
chr1 3894519 1.56% 20173
chr2 3719823 1.54% 19398
chr3 2965006 1.50% 15518
chr4 2551236 1.34% 13421
chr5 2646282 1.46% 13819
chr6 2864430 1.68% 14870
chr7 2543609 1.60% 13341
chr8 2077000 1.43% 10858
chr9 1868368 1.35% 9721
chr10 2053972 1.54% 10679
chr11 2075245 1.54% 10701
chr12 2180804 1.64% 11300
chr13 1291022 1.13% 6799
chr14 1297092 1.21% 6720
chr15 1384165 1.36% 7145
chr16 1227053 1.36% 6322
chr17 1641595 1.97% 8386
chr18 941238 1.17% 5017
chr19 1136803 1.94% 5744
chr20 987226 1.53% 5136
chr21 510310 1.09% 2607
chr22 671661 1.32% 3408
chrX 1221756 0.78% 6439
chrY 64218 0.11% 345
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 227867 1 1000 192.28 198
global segment-length histogram

Files

Filename Size md5
ENCFF836HEK.bed.gz 2.45 MB 360a2912ac6e12ac170377257a8e7b8c
ENCFF836HEK.tabix.bed.gz 2.23 MB bce3c4332e3339201e93146e8b32fb67
ENCFF836HEK.tabix.bed.gz.tbi 682.53 KB d9475a4247200abdedb52ff5a459a319
genomic_resource.yaml 1.7 KB bc5c035a0e739306e34282a8b0b969a8
statistics/