Resource
| Id | DNase-seq/ENCSR000EOS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EOS [biosample_summary="Homo sapiens Jurkat, Clone E6-1"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN073DEM|/analyses/ENCAN073DEM/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF731JTZ|/files/ENCFF731JTZ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 32051899 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF825XSS|/files/ENCFF825XSS/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 31755241 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EOS | float |
DNase-seq_ENCSR000EOS |
DNase-seq ENCSR000EOS [biosample_summary="Homo sapiens Jurkat, Clone E6-1"]
|
 |
[4, 2.1e+04] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 19684826 | 0.61% | 131042 |
| chr1 | 1806450 | 0.73% | 12028 |
| chr2 | 1583100 | 0.65% | 10532 |
| chr3 | 1270410 | 0.64% | 8458 |
| chr4 | 975256 | 0.51% | 6492 |
| chr5 | 1048471 | 0.58% | 6979 |
| chr6 | 1147007 | 0.67% | 7637 |
| chr7 | 955239 | 0.60% | 6360 |
| chr8 | 892384 | 0.61% | 5935 |
| chr9 | 787950 | 0.57% | 5245 |
| chr10 | 967597 | 0.72% | 6443 |
| chr11 | 963541 | 0.71% | 6413 |
| chr12 | 958200 | 0.72% | 6373 |
| chr13 | 542172 | 0.47% | 3607 |
| chr14 | 649950 | 0.61% | 4328 |
| chr15 | 674250 | 0.66% | 4491 |
| chr16 | 656284 | 0.73% | 4373 |
| chr17 | 833104 | 1.00% | 5551 |
| chr18 | 439262 | 0.55% | 2925 |
| chr19 | 668527 | 1.14% | 4455 |
| chr20 | 559800 | 0.87% | 3727 |
| chr21 | 242550 | 0.52% | 1613 |
| chr22 | 378150 | 0.74% | 2517 |
| chrX | 632522 | 0.41% | 4210 |
| chrY | 52650 | 0.09% | 350 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 131042 | 22 | 300 | 150.22 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF785KPP.bed.gz | 1.25 MB | d0781aded855dcb593c472b31d6af85c |
| ENCFF785KPP.tabix.bed.gz | 1.08 MB | d9d89f7579f40c09b6174fe04afaeb14 |
| ENCFF785KPP.tabix.bed.gz.tbi | 551.98 KB | a7793509c35a5238edcb5431c996b137 |
| genomic_resource.yaml | 2.53 KB | 74e6d8e36c12694334372d9fa446028f |
| statistics/ |