Resource

Id DNase-seq/ENCSR000EORcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EOR [biosample_summary="Homo sapiens fibroblast of villous mesenchyme"]
Description
Labels
  • accession: ENCSR000EOR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002558/
  • biosample_summary: Homo sapiens fibroblast of villous mesenchyme
  • date_created: 2014-01-16T21:43:16.192144+00:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000EOR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EOR float

DNase-seq_ENCSR000EOR

DNase-seq ENCSR000EOR [biosample_summary="Homo sapiens fibroblast of villous mesenchyme"]
HISTOGRAM FOR DNase-seq_ENCSR000EOR [4, 2.99e+04]
n
49,575,136
mean
287
sd
574

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 495751361.54% 330102
chr1 4365928 1.75% 29078
chr2 4184156 1.73% 27865
chr3 3315071 1.67% 22057
chr4 2782427 1.46% 18516
chr5 2932912 1.62% 19535
chr6 3110631 1.82% 20717
chr7 2585882 1.62% 17227
chr8 2420632 1.67% 16115
chr9 2118518 1.53% 14108
chr10 2408271 1.80% 16030
chr11 2354832 1.74% 15674
chr12 2489186 1.87% 16572
chr13 1464862 1.28% 9757
chr14 1518720 1.42% 10111
chr15 1625779 1.59% 10830
chr16 1445365 1.60% 9629
chr17 1901216 2.28% 12667
chr18 1152037 1.43% 7674
chr19 1256096 2.14% 8365
chr20 1186225 1.84% 7899
chr21 603279 1.29% 4018
chr22 775142 1.53% 5164
chrX 1504919 0.96% 10009
chrY 73050 0.13% 485
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 330102 29 385 150.18 150
global segment-length histogram

Files

Filename Size md5
ENCFF311UAO.bed.gz 3.12 MB 455b036a967f344861eb48bee8bea7f1
ENCFF311UAO.tabix.bed.gz 2.71 MB 52d49d438b047518f1419eab20c9cd30
ENCFF311UAO.tabix.bed.gz.tbi 797.51 KB f393d8af460ad4c063b88912ab898efe
genomic_resource.yaml 1.33 KB 3d5cfaaa7b4a661328b4dadd3ee4127c
statistics/