Resource

Id DNase-seq/ENCSR000EOOcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EOO [biosample_summary="Homo sapiens skeletal muscle myoblast"]
Description
Labels
  • accession: ENCSR000EOO
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000515/
  • biosample_summary: Homo sapiens skeletal muscle myoblast
  • date_created: 2014-01-16T21:43:07.218292+00:00
  • date_released: 2011-05-04
  • doi: 10.17989/ENCSR000EOO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EOO float

DNase-seq_ENCSR000EOO
DNase-seq ENCSR000EOO [biosample_summary="Homo sapiens skeletal muscle myoblast"]
 HISTOGRAM FOR DNase-seq_ENCSR000EOO [0.0121, 38.5]
n
73,392,736
mean
1.28
sd
2.29

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 733927362.28% 374308
chr1 6623945 2.66% 33690
chr2 6343765 2.62% 32372
chr3 5170031 2.61% 26419
chr4 3977008 2.09% 20507
chr5 4350029 2.40% 22197
chr6 4630840 2.71% 23554
chr7 3660927 2.30% 18851
chr8 3481094 2.40% 17759
chr9 3189957 2.30% 16229
chr10 3720783 2.78% 18892
chr11 3627517 2.69% 18319
chr12 3584351 2.69% 18312
chr13 2079617 1.82% 10612
chr14 2177378 2.03% 11083
chr15 2437010 2.39% 12377
chr16 2064873 2.29% 10496
chr17 2729089 3.28% 13885
chr18 1683257 2.09% 8666
chr19 1679709 2.87% 8463
chr20 1808783 2.81% 9209
chr21 879462 1.88% 4434
chr22 1201838 2.36% 6074
chrX 2152907 1.38% 11182
chrY 138566 0.24% 726
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 374308 1 844 196.08 200
global segment-length histogram

Files

Filename Size md5
ENCFF647RNC.bed.gz 4.06 MB 656db8b981613321290fbdd659bd68f7
ENCFF647RNC.tabix.bed.gz 3.7 MB dfce2f636498e356abf9737c8122a9cb
ENCFF647RNC.tabix.bed.gz.tbi 808.05 KB 006aee3fabc8b6dc7cc247a4162569a3
genomic_resource.yaml 1.75 KB 4b83d331225cc246d0cceb39d1e9e9e2
statistics/