Resource
| Id | DNase-seq/ENCSR000EON |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EON [biosample_summary="Homo sapiens retinal pigment epithelial cell"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF157ZQZ|/files/ENCFF157ZQZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 27113490 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF864MVZ|/files/ENCFF864MVZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 24894494 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EON | float |
DNase-seq_ENCSR000EON |
DNase-seq ENCSR000EON [biosample_summary="Homo sapiens retinal pigment epithelial cell"]
|
 |
[0.186, 36] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 15897689 | 0.49% | 89218 |
| chr1 | 1388973 | 0.56% | 7763 |
| chr2 | 1333356 | 0.55% | 7551 |
| chr3 | 1154474 | 0.58% | 6449 |
| chr4 | 1045830 | 0.55% | 5956 |
| chr5 | 954340 | 0.53% | 5392 |
| chr6 | 1020656 | 0.60% | 5762 |
| chr7 | 815364 | 0.51% | 4642 |
| chr8 | 796578 | 0.55% | 4492 |
| chr9 | 677647 | 0.49% | 3795 |
| chr10 | 756049 | 0.57% | 4248 |
| chr11 | 763958 | 0.57% | 4276 |
| chr12 | 766673 | 0.58% | 4272 |
| chr13 | 520767 | 0.46% | 2910 |
| chr14 | 513216 | 0.48% | 2868 |
| chr15 | 483269 | 0.47% | 2730 |
| chr16 | 418531 | 0.46% | 2345 |
| chr17 | 529160 | 0.64% | 2909 |
| chr18 | 403461 | 0.50% | 2282 |
| chr19 | 424874 | 0.72% | 2239 |
| chr20 | 319297 | 0.50% | 1783 |
| chr21 | 190565 | 0.41% | 1052 |
| chr22 | 216896 | 0.43% | 1195 |
| chrX | 403755 | 0.26% | 2307 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 89218 | 1 | 660 | 178.19 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF595DAC.bed.gz | 962.98 KB | 4e96c576dee50520058c9c28874d48de |
| ENCFF595DAC.tabix.bed.gz | 850.69 KB | 8819b51d8e9b3fe23314ba38a86ec43d |
| ENCFF595DAC.tabix.bed.gz.tbi | 455.07 KB | 0be36382fb09950779283409c09e5dd8 |
| genomic_resource.yaml | 2.42 KB | 3fab04d161633a8a1b31cbfbeb4b5af9 |
| statistics/ |