Resource
| Id | DNase-seq/ENCSR000EOJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EOJ [biosample_summary="Homo sapiens fibroblast of lung"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN849FAI|/analyses/ENCAN849FAI/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF453HHR|/files/ENCFF453HHR/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 41539039 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF876COX|/files/ENCFF876COX/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 41354711 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EOJ | float |
DNase-seq_ENCSR000EOJ |
DNase-seq ENCSR000EOJ [biosample_summary="Homo sapiens fibroblast of lung"]
|
 |
[5, 1.47e+05] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 44398916 | 1.38% | 295650 |
| chr1 | 3929323 | 1.58% | 26160 |
| chr2 | 3776149 | 1.56% | 25150 |
| chr3 | 3017360 | 1.52% | 20087 |
| chr4 | 2570795 | 1.35% | 17114 |
| chr5 | 2699914 | 1.49% | 17983 |
| chr6 | 2815719 | 1.65% | 18749 |
| chr7 | 2318166 | 1.45% | 15432 |
| chr8 | 2149175 | 1.48% | 14310 |
| chr9 | 1854228 | 1.34% | 12352 |
| chr10 | 2137322 | 1.60% | 14234 |
| chr11 | 2123057 | 1.57% | 14142 |
| chr12 | 2152987 | 1.62% | 14331 |
| chr13 | 1474905 | 1.29% | 9815 |
| chr14 | 1344331 | 1.26% | 8954 |
| chr15 | 1408199 | 1.38% | 9378 |
| chr16 | 1223343 | 1.35% | 8146 |
| chr17 | 1655960 | 1.99% | 11034 |
| chr18 | 1055123 | 1.31% | 7027 |
| chr19 | 1065483 | 1.82% | 7099 |
| chr20 | 1018313 | 1.58% | 6785 |
| chr21 | 515912 | 1.10% | 3439 |
| chr22 | 661610 | 1.30% | 4409 |
| chrX | 1355792 | 0.87% | 9016 |
| chrY | 75750 | 0.13% | 504 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 295650 | 12 | 450 | 150.17 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF016RJA.bed.gz | 2.81 MB | 0a6dbea2b83de80a4b877be582e3ec60 |
| ENCFF016RJA.tabix.bed.gz | 2.44 MB | 690dc94525f589d325a2924354eea4d4 |
| ENCFF016RJA.tabix.bed.gz.tbi | 778.32 KB | fa05bb068ca55da528ed11dac99b96bb |
| genomic_resource.yaml | 2.53 KB | 4ece4a4677d55752b3f6c16fa0c5ef4c |
| statistics/ |