Resource
| Id | DNase-seq/ENCSR000EOI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EOI [biosample_summary="Homo sapiens fibroblast of peridontal ligament male"] |
| Description |
status: released biological_replicates: Rep 1 summary: male output_type: peaks audit_internal_action: Archived analysis {ENCAN580JHX|/analyses/ENCAN580JHX/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EOI | float |
DNase-seq_ENCSR000EOI |
DNase-seq ENCSR000EOI [biosample_summary="Homo sapiens fibroblast of peridontal ligament male"]
|
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[3, 2.42e+04] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 48693699 | 1.51% | 324242 |
| chr1 | 4532803 | 1.82% | 30191 |
| chr2 | 4284334 | 1.77% | 28522 |
| chr3 | 3391405 | 1.71% | 22586 |
| chr4 | 2876806 | 1.51% | 19157 |
| chr5 | 3004004 | 1.65% | 19999 |
| chr6 | 3060275 | 1.79% | 20387 |
| chr7 | 2482587 | 1.56% | 16539 |
| chr8 | 2390914 | 1.65% | 15922 |
| chr9 | 2032322 | 1.47% | 13529 |
| chr10 | 2273325 | 1.70% | 15138 |
| chr11 | 2317813 | 1.72% | 15428 |
| chr12 | 2444024 | 1.83% | 16263 |
| chr13 | 1497434 | 1.31% | 9968 |
| chr14 | 1507765 | 1.41% | 10046 |
| chr15 | 1563149 | 1.53% | 10408 |
| chr16 | 1321058 | 1.46% | 8796 |
| chr17 | 1716999 | 2.06% | 11437 |
| chr18 | 1158309 | 1.44% | 7717 |
| chr19 | 1067528 | 1.82% | 7111 |
| chr20 | 1105939 | 1.72% | 7368 |
| chr21 | 542139 | 1.16% | 3609 |
| chr22 | 672676 | 1.32% | 4482 |
| chrX | 1362054 | 0.87% | 9054 |
| chrY | 88037 | 0.15% | 585 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 324242 | 1 | 450 | 150.18 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF620HKT.bed.gz | 3.08 MB | e08a374fe85fd34c972eca82a1ee506c |
| ENCFF620HKT.tabix.bed.gz | 2.67 MB | 4194d2b61cd4e08e26572a07e35b5689 |
| ENCFF620HKT.tabix.bed.gz.tbi | 779.28 KB | fa90c5af1602d9268db8b4690ddae2c3 |
| genomic_resource.yaml | 1.35 KB | ea9b26ca2554cbdecec0ba91bd23c933 |
| statistics/ |
