Resource

Id DNase-seq/ENCSR000EOIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EOI [biosample_summary="Homo sapiens fibroblast of peridontal ligament male"]
Description
Labels
  • accession: ENCSR000EOI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_2000017/
  • biosample_summary: Homo sapiens fibroblast of peridontal ligament male
  • date_created: 2013-12-12T07:09:15.690993+00:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000EOI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EOI float

DNase-seq_ENCSR000EOI

DNase-seq ENCSR000EOI [biosample_summary="Homo sapiens fibroblast of peridontal ligament male"]
HISTOGRAM FOR DNase-seq_ENCSR000EOI [3, 2.42e+04]
n
48,693,699
mean
327
sd
620

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 486936991.51% 324242
chr1 4532803 1.82% 30191
chr2 4284334 1.77% 28522
chr3 3391405 1.71% 22586
chr4 2876806 1.51% 19157
chr5 3004004 1.65% 19999
chr6 3060275 1.79% 20387
chr7 2482587 1.56% 16539
chr8 2390914 1.65% 15922
chr9 2032322 1.47% 13529
chr10 2273325 1.70% 15138
chr11 2317813 1.72% 15428
chr12 2444024 1.83% 16263
chr13 1497434 1.31% 9968
chr14 1507765 1.41% 10046
chr15 1563149 1.53% 10408
chr16 1321058 1.46% 8796
chr17 1716999 2.06% 11437
chr18 1158309 1.44% 7717
chr19 1067528 1.82% 7111
chr20 1105939 1.72% 7368
chr21 542139 1.16% 3609
chr22 672676 1.32% 4482
chrX 1362054 0.87% 9054
chrY 88037 0.15% 585
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 324242 1 450 150.18 150
global segment-length histogram

Files

Filename Size md5
ENCFF620HKT.bed.gz 3.08 MB e08a374fe85fd34c972eca82a1ee506c
ENCFF620HKT.tabix.bed.gz 2.67 MB 4194d2b61cd4e08e26572a07e35b5689
ENCFF620HKT.tabix.bed.gz.tbi 779.28 KB fa90c5af1602d9268db8b4690ddae2c3
genomic_resource.yaml 1.35 KB ea9b26ca2554cbdecec0ba91bd23c933
statistics/