Resource

Id DNase-seq/ENCSR000EODcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EOD [biosample_summary="Homo sapiens lung microvascular endothelial cell female"]
Description
Labels
  • accession: ENCSR000EOD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_2000016/
  • biosample_summary: Homo sapiens lung microvascular endothelial cell female
  • date_created: 2013-12-12T07:09:10.085493+00:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000EOD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EOD float

DNase-seq_ENCSR000EOD
DNase-seq ENCSR000EOD [biosample_summary="Homo sapiens lung microvascular endothelial cell female"]
 HISTOGRAM FOR DNase-seq_ENCSR000EOD [0.0226, 40.6]
n
38,211,441
mean
1.82
sd
2.91

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 382114411.19% 198696
chr1 3602014 1.45% 18762
chr2 3078802 1.27% 16081
chr3 2594424 1.31% 13498
chr4 1911551 1.00% 10017
chr5 2132843 1.17% 11123
chr6 2376068 1.39% 12376
chr7 1943197 1.22% 10181
chr8 1770489 1.22% 9184
chr9 1627505 1.18% 8465
chr10 1823507 1.36% 9461
chr11 1870410 1.38% 9695
chr12 2067757 1.55% 10691
chr13 1044094 0.91% 5418
chr14 1194103 1.12% 6219
chr15 1321014 1.30% 6784
chr16 1130987 1.25% 5894
chr17 1560181 1.87% 8043
chr18 804208 1.00% 4210
chr19 1193212 2.04% 6106
chr20 961540 1.49% 4978
chr21 416552 0.89% 2161
chr22 656735 1.29% 3401
chrX 1128798 0.72% 5937
chrY 1450 <0.01% 11
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 198696 2 860 192.31 180
global segment-length histogram

Files

Filename Size md5
ENCFF622EPU.bed.gz 2.16 MB 3a6c1e16df1993fd76d10019ec67507d
ENCFF622EPU.tabix.bed.gz 1.98 MB 159a36a68f09eff7d585074f3fd971f9
ENCFF622EPU.tabix.bed.gz.tbi 572.2 KB d50f3b52bec4af0b24899443fdffa890
genomic_resource.yaml 1.8 KB 1d2be486108a1ae561c8c9736c8689ef
statistics/