Resource

Id DNase-seq/ENCSR000ENWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000ENW [biosample_summary="Homo sapiens fibroblast of mammary gland female"]
Description
Labels
  • accession: ENCSR000ENW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002555/
  • biosample_summary: Homo sapiens fibroblast of mammary gland female
  • date_created: 2013-12-12T07:09:01.860386+00:00
  • date_released: 2010-12-14
  • doi: 10.17989/ENCSR000ENW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000ENW float

DNase-seq_ENCSR000ENW

DNase-seq ENCSR000ENW [biosample_summary="Homo sapiens fibroblast of mammary gland female"]
HISTOGRAM FOR DNase-seq_ENCSR000ENW [0.0302, 52.5]
n
49,489,566
mean
1.99
sd
3.44

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 494895661.54% 271798
chr1 4490155 1.80% 24689
chr2 4178733 1.73% 22956
chr3 3405899 1.72% 18729
chr4 2672082 1.40% 14894
chr5 2961162 1.63% 16284
chr6 3139960 1.84% 17161
chr7 2552661 1.60% 14163
chr8 2472812 1.70% 13535
chr9 2141366 1.55% 11690
chr10 2398930 1.79% 13125
chr11 2343886 1.74% 12736
chr12 2493051 1.87% 13713
chr13 1420296 1.24% 7834
chr14 1557844 1.46% 8578
chr15 1567758 1.54% 8599
chr16 1375564 1.52% 7563
chr17 1848629 2.22% 10083
chr18 1157370 1.44% 6420
chr19 1291382 2.20% 6974
chr20 1198641 1.86% 6546
chr21 584630 1.25% 3146
chr22 736839 1.45% 4041
chrX 1498516 0.96% 8328
chrY 1400 <0.01% 11
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 271798 3 860 182.08 180
global segment-length histogram

Files

Filename Size md5
ENCFF032AZY.bed.gz 2.92 MB c8f8e8e08971d848a8dd2283a257662d
ENCFF032AZY.tabix.bed.gz 2.66 MB cb12e0805fb81ba4ea5c6d27862234b5
ENCFF032AZY.tabix.bed.gz.tbi 723.53 KB 9c05eed228ef3bb8045b39ea332f0e0e
genomic_resource.yaml 1.78 KB 344b7e946efd6203717c66997a98246e
statistics/