Resource
| Id | DNase-seq/ENCSR000ENW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000ENW [biosample_summary="Homo sapiens fibroblast of mammary gland female"] |
| Description |
status: released biological_replicates: Rep 2 summary: female output_type: peaks audit_warning: Alignment file {ENCFF762IIO|/files/ENCFF762IIO/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 26870414 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENW | float |
DNase-seq_ENCSR000ENW |
DNase-seq ENCSR000ENW [biosample_summary="Homo sapiens fibroblast of mammary gland female"]
|
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[0.0302, 52.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 49489566 | 1.54% | 271798 |
| chr1 | 4490155 | 1.80% | 24689 |
| chr2 | 4178733 | 1.73% | 22956 |
| chr3 | 3405899 | 1.72% | 18729 |
| chr4 | 2672082 | 1.40% | 14894 |
| chr5 | 2961162 | 1.63% | 16284 |
| chr6 | 3139960 | 1.84% | 17161 |
| chr7 | 2552661 | 1.60% | 14163 |
| chr8 | 2472812 | 1.70% | 13535 |
| chr9 | 2141366 | 1.55% | 11690 |
| chr10 | 2398930 | 1.79% | 13125 |
| chr11 | 2343886 | 1.74% | 12736 |
| chr12 | 2493051 | 1.87% | 13713 |
| chr13 | 1420296 | 1.24% | 7834 |
| chr14 | 1557844 | 1.46% | 8578 |
| chr15 | 1567758 | 1.54% | 8599 |
| chr16 | 1375564 | 1.52% | 7563 |
| chr17 | 1848629 | 2.22% | 10083 |
| chr18 | 1157370 | 1.44% | 6420 |
| chr19 | 1291382 | 2.20% | 6974 |
| chr20 | 1198641 | 1.86% | 6546 |
| chr21 | 584630 | 1.25% | 3146 |
| chr22 | 736839 | 1.45% | 4041 |
| chrX | 1498516 | 0.96% | 8328 |
| chrY | 1400 | <0.01% | 11 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 271798 | 3 | 860 | 182.08 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF032AZY.bed.gz | 2.92 MB | c8f8e8e08971d848a8dd2283a257662d |
| ENCFF032AZY.tabix.bed.gz | 2.66 MB | cb12e0805fb81ba4ea5c6d27862234b5 |
| ENCFF032AZY.tabix.bed.gz.tbi | 723.53 KB | 9c05eed228ef3bb8045b39ea332f0e0e |
| genomic_resource.yaml | 1.78 KB | 344b7e946efd6203717c66997a98246e |
| statistics/ |
