Resource

Id DNase-seq/ENCSR000ENScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000ENS [biosample_summary="Homo sapiens fibroblast of gingiva"]
Description
Labels
  • accession: ENCSR000ENS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002552/
  • biosample_summary: Homo sapiens fibroblast of gingiva
  • date_created: 2014-01-16T21:44:49.416947+00:00
  • date_released: 2011-05-04
  • doi: 10.17989/ENCSR000ENS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000ENS float

DNase-seq_ENCSR000ENS
DNase-seq ENCSR000ENS [biosample_summary="Homo sapiens fibroblast of gingiva"]
 HISTOGRAM FOR DNase-seq_ENCSR000ENS [0.0277, 49.8]
n
36,545,341
mean
1.75
sd
3.03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 365453411.14% 191625
chr1 3317914 1.33% 17455
chr2 3031790 1.25% 15990
chr3 2540039 1.28% 13328
chr4 1881493 0.99% 10062
chr5 2180713 1.20% 11412
chr6 2363377 1.38% 12361
chr7 1867495 1.17% 9901
chr8 1827452 1.26% 9582
chr9 1634717 1.18% 8531
chr10 1726919 1.29% 9000
chr11 1692393 1.25% 8795
chr12 1879178 1.41% 9816
chr13 1026404 0.90% 5485
chr14 1135732 1.06% 5878
chr15 1173175 1.15% 6120
chr16 1014860 1.12% 5270
chr17 1410418 1.69% 7339
chr18 818254 1.02% 4333
chr19 970770 1.66% 4910
chr20 909265 1.41% 4756
chr21 439637 0.94% 2303
chr22 565884 1.11% 2971
chrX 1083158 0.69% 5734
chrY 54304 0.09% 293
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 191625 4 1280 190.71 185
global segment-length histogram

Files

Filename Size md5
ENCFF861IVZ.bed.gz 2.09 MB ee9b3a7850d42eacd00cf20751b33976
ENCFF861IVZ.tabix.bed.gz 1.9 MB 004a2bcff65816291b8d3124c7750735
ENCFF861IVZ.tabix.bed.gz.tbi 599.36 KB 79455056e3b560ddca0afecd0917a7a9
genomic_resource.yaml 1.75 KB 90830c54ca500cd2f6422994fd82fadd
statistics/