Resource

Id DNase-seq/ENCSR000ENQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000ENQ [biosample_summary="Homo sapiens foreskin fibroblast male newborn"]
Description
Labels
  • accession: ENCSR000ENQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001608/
  • biosample_summary: Homo sapiens foreskin fibroblast male newborn
  • date_created: 2014-01-16T21:44:51.003162+00:00
  • date_released: 2011-05-04
  • doi: 10.17989/ENCSR000ENQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000ENQ float

DNase-seq_ENCSR000ENQ

DNase-seq ENCSR000ENQ [biosample_summary="Homo sapiens foreskin fibroblast male newborn"]
HISTOGRAM FOR DNase-seq_ENCSR000ENQ [6, 5.46e+04]
n
43,434,525
mean
308
sd
586

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 434345251.35% 289313
chr1 4035124 1.62% 26871
chr2 3645004 1.50% 24282
chr3 2959007 1.49% 19718
chr4 2300524 1.21% 15318
chr5 2558714 1.41% 17041
chr6 2660687 1.56% 17719
chr7 2181692 1.37% 14532
chr8 2071231 1.43% 13797
chr9 1831060 1.32% 12199
chr10 2068328 1.55% 13782
chr11 2123463 1.57% 14149
chr12 2194449 1.65% 14622
chr13 1222749 1.07% 8144
chr14 1326667 1.24% 8831
chr15 1413892 1.39% 9421
chr16 1309451 1.45% 8719
chr17 1703990 2.05% 11356
chr18 996047 1.24% 6635
chr19 1189332 2.03% 7919
chr20 1080076 1.68% 7195
chr21 522860 1.12% 3482
chr22 696753 1.37% 4639
chrX 1265425 0.81% 8424
chrY 78000 0.14% 518
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 289313 33 449 150.13 150
global segment-length histogram

Files

Filename Size md5
ENCFF090PQC.bed.gz 2.75 MB 65c8c628171e5ec611d48f64167a8367
ENCFF090PQC.tabix.bed.gz 2.39 MB 9bea2391d1a8fa8906f3f6749f99ace2
ENCFF090PQC.tabix.bed.gz.tbi 751.49 KB 3fae88d9421669ae96f94557973c8a5e
genomic_resource.yaml 1.35 KB 01ad2e13456220a5ab0b1f6fe48be77e
statistics/