Resource

Id DNase-seq/ENCSR000ENNcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000ENN [biosample_summary="Homo sapiens epithelial cell of esophagus"]
Description
Labels
  • accession: ENCSR000ENN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002252/
  • biosample_summary: Homo sapiens epithelial cell of esophagus
  • date_created: 2014-01-16T21:44:39.769182+00:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000ENN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000ENN float

DNase-seq_ENCSR000ENN

DNase-seq ENCSR000ENN [biosample_summary="Homo sapiens epithelial cell of esophagus"]
HISTOGRAM FOR DNase-seq_ENCSR000ENN [0.0273, 20.9]
n
53,198,070
mean
1.51
sd
2.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 531980701.65% 297127
chr1 4891030 1.96% 27166
chr2 4403785 1.82% 24672
chr3 3673638 1.85% 20561
chr4 3154019 1.66% 17887
chr5 3151189 1.74% 17704
chr6 3384692 1.98% 18830
chr7 2635878 1.65% 14864
chr8 2553842 1.76% 14301
chr9 2242701 1.62% 12537
chr10 2451584 1.83% 13732
chr11 2591266 1.92% 14437
chr12 2610811 1.96% 14558
chr13 1587761 1.39% 8973
chr14 1627184 1.52% 9062
chr15 1684517 1.65% 9364
chr16 1475767 1.63% 8123
chr17 1915736 2.30% 10493
chr18 1294063 1.61% 7251
chr19 1348755 2.30% 7270
chr20 1302239 2.02% 7178
chr21 584506 1.25% 3258
chr22 773355 1.52% 4279
chrX 1725833 1.11% 9847
chrY 133919 0.23% 780
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 297127 2 840 179.04 180
global segment-length histogram

Files

Filename Size md5
ENCFF722AWL.bed.gz 3.19 MB 430be9c4ba4d28140d1c61df5678734a
ENCFF722AWL.tabix.bed.gz 2.91 MB 523e37788a163c880551748bb00851a1
ENCFF722AWL.tabix.bed.gz.tbi 803.54 KB 93e8a3d99c1ed762b33ec8fc44cff410
genomic_resource.yaml 1.76 KB cd53c58238de079a89e8d3449b16c33e
statistics/