Resource
| Id | DNase-seq/ENCSR000ENK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000ENK [biosample_summary="Homo sapiens fibroblast of the conjunctiva"] |
| Description |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN187LSB|/analyses/ENCAN187LSB/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF999HTN|/files/ENCFF999HTN/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 44742059 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF931ZJL|/files/ENCFF931ZJL/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 35826852 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF236GKU|/files/ENCFF236GKU/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 44428476 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF422YEO|/files/ENCFF422YEO/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 35563718 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENK | float |
DNase-seq_ENCSR000ENK |
DNase-seq ENCSR000ENK [biosample_summary="Homo sapiens fibroblast of the conjunctiva"]
|
 |
[4, 2.04e+04] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 18592022 | 0.58% | 123813 |
| chr1 | 1697844 | 0.68% | 11307 |
| chr2 | 1559841 | 0.64% | 10384 |
| chr3 | 1291487 | 0.65% | 8599 |
| chr4 | 1013431 | 0.53% | 6748 |
| chr5 | 1105500 | 0.61% | 7359 |
| chr6 | 1158750 | 0.68% | 7713 |
| chr7 | 933684 | 0.59% | 6218 |
| chr8 | 892650 | 0.62% | 5945 |
| chr9 | 796623 | 0.58% | 5304 |
| chr10 | 882593 | 0.66% | 5881 |
| chr11 | 903750 | 0.67% | 6022 |
| chr12 | 931800 | 0.70% | 6206 |
| chr13 | 539400 | 0.47% | 3593 |
| chr14 | 563980 | 0.53% | 3754 |
| chr15 | 581074 | 0.57% | 3869 |
| chr16 | 542550 | 0.60% | 3614 |
| chr17 | 731100 | 0.88% | 4874 |
| chr18 | 403350 | 0.50% | 2687 |
| chr19 | 543748 | 0.93% | 3624 |
| chr20 | 447450 | 0.69% | 2980 |
| chr21 | 215700 | 0.46% | 1437 |
| chr22 | 281700 | 0.55% | 1873 |
| chrX | 572517 | 0.37% | 3812 |
| chrY | 1500 | <0.01% | 10 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 123813 | 31 | 316 | 150.16 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF115KOG.bed.gz | 1.17 MB | 61e64308eff8d4ae497872f455cad378 |
| ENCFF115KOG.tabix.bed.gz | 1.01 MB | 2a18cb8ef4eefa85e4848ca9c38e3a7b |
| ENCFF115KOG.tabix.bed.gz.tbi | 531.92 KB | 0a1d3dc5e8161ac7a703854cd1cdc237 |
| genomic_resource.yaml | 3.81 KB | 09ed4a421c561f2188780375e704f387 |
| statistics/ |