Resource

Id DNase-seq/ENCSR000ENIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000ENI [biosample_summary="Homo sapiens cardiac fibroblast female adult"]
Description
Labels
  • accession: ENCSR000ENI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002548/
  • biosample_summary: Homo sapiens cardiac fibroblast female adult
  • date_created: 2014-01-16T21:44:43.022826+00:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000ENI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female adult
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000ENI float

DNase-seq_ENCSR000ENI
DNase-seq ENCSR000ENI [biosample_summary="Homo sapiens cardiac fibroblast female adult"]
 HISTOGRAM FOR DNase-seq_ENCSR000ENI [1, 2.84e+04]
n
54,611,543
mean
355
sd
663

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 546115431.70% 363724
chr1 4823925 1.94% 32129
chr2 4618376 1.91% 30757
chr3 3839680 1.94% 25565
chr4 3186010 1.67% 21212
chr5 3288485 1.81% 21899
chr6 3425918 2.01% 22827
chr7 2855102 1.79% 19020
chr8 2640762 1.82% 17586
chr9 2292243 1.66% 15267
chr10 2558671 1.91% 17043
chr11 2632193 1.95% 17527
chr12 2740320 2.06% 18261
chr13 1644985 1.44% 10955
chr14 1659354 1.55% 11052
chr15 1748662 1.71% 11645
chr16 1488311 1.65% 9918
chr17 1963116 2.36% 13077
chr18 1293611 1.61% 8614
chr19 1396813 2.38% 9306
chr20 1231571 1.91% 8200
chr21 657246 1.41% 4377
chr22 802139 1.58% 5343
chrX 1720100 1.10% 11451
chrY 103950 0.18% 693
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 363724 9 450 150.15 150
global segment-length histogram

Files

Filename Size md5
ENCFF528ZJQ.bed.gz 3.45 MB 7863775ccadbe5292a8be99c4ccaec64
ENCFF528ZJQ.tabix.bed.gz 3.0 MB 8bf9d0c381363ccf0d3a600172f332e5
ENCFF528ZJQ.tabix.bed.gz.tbi 842.22 KB 6d892d2c5fc33f7bfec34c3e0441007d
genomic_resource.yaml 1.34 KB 6bc92fd23d30d10bae1dfbbccbb8c1a4
statistics/