Resource

Id DNase-seq/ENCSR000ENHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000ENH [biosample_summary="Homo sapiens cardiac fibroblast"]
Description
Labels
  • accession: ENCSR000ENH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002548/
  • biosample_summary: Homo sapiens cardiac fibroblast
  • date_created: 2014-01-16T21:44:44.581234+00:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000ENH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000ENH float

DNase-seq_ENCSR000ENH
DNase-seq ENCSR000ENH [biosample_summary="Homo sapiens cardiac fibroblast"]
 HISTOGRAM FOR DNase-seq_ENCSR000ENH [4, 2.91e+05]
n
46,791,730
mean
355
sd
982

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 467917301.45% 311671
chr1 4272474 1.72% 28459
chr2 3889506 1.61% 25906
chr3 3186452 1.61% 21226
chr4 2627897 1.38% 17496
chr5 2728960 1.50% 18185
chr6 2905440 1.70% 19341
chr7 2380661 1.49% 15858
chr8 2250904 1.55% 14992
chr9 1998707 1.44% 13319
chr10 2279985 1.70% 15185
chr11 2315559 1.71% 15428
chr12 2289676 1.72% 15249
chr13 1392981 1.22% 9267
chr14 1447416 1.35% 9641
chr15 1524442 1.49% 10152
chr16 1271977 1.41% 8474
chr17 1798771 2.16% 11985
chr18 1132879 1.41% 7548
chr19 1201355 2.05% 8010
chr20 1103912 1.71% 7350
chr21 537981 1.15% 3586
chr22 738688 1.45% 4921
chrX 1442657 0.92% 9610
chrY 72450 0.13% 483
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 311671 18 450 150.13 150
global segment-length histogram

Files

Filename Size md5
ENCFF111NEU.bed.gz 2.96 MB ff8f5466cae5967572c1435dc83109c9
ENCFF111NEU.tabix.bed.gz 2.57 MB 55019e8086ee108d051e2165b638199a
ENCFF111NEU.tabix.bed.gz.tbi 779.86 KB ad4908fa0f7b808c156e7ca3c3e1872e
genomic_resource.yaml 1.91 KB ebc7e07f1a2cf91736ecc63e8f6d9059
statistics/