Resource

Id DNase-seq/ENCSR000ENAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000ENA [biosample_summary="Homo sapiens astrocyte of the hippocampus"]
Description
Labels
  • accession: ENCSR000ENA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002604/
  • biosample_summary: Homo sapiens astrocyte of the hippocampus
  • date_created: 2014-01-16T21:44:38.266996+00:00
  • date_released: 2011-05-04
  • doi: 10.17989/ENCSR000ENA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000ENA float

DNase-seq_ENCSR000ENA

DNase-seq ENCSR000ENA [biosample_summary="Homo sapiens astrocyte of the hippocampus"]
HISTOGRAM FOR DNase-seq_ENCSR000ENA [2, 3.36e+04]
n
54,957,417
mean
279
sd
488

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 549574171.71% 365958
chr1 4849318 1.95% 32299
chr2 4671006 1.93% 31098
chr3 3802021 1.92% 25311
chr4 3159020 1.66% 21041
chr5 3336097 1.84% 22213
chr6 3331133 1.95% 22181
chr7 2904049 1.82% 19339
chr8 2731178 1.88% 18179
chr9 2351268 1.70% 15649
chr10 2591033 1.94% 17258
chr11 2732360 2.02% 18197
chr12 2619302 1.97% 17452
chr13 1662581 1.45% 11070
chr14 1726426 1.61% 11495
chr15 1719594 1.69% 11453
chr16 1600593 1.77% 10665
chr17 1986242 2.39% 13229
chr18 1368041 1.70% 9112
chr19 1313441 2.24% 8743
chr20 1271565 1.97% 8464
chr21 633065 1.36% 4214
chr22 848214 1.67% 5649
chrX 1725870 1.11% 11489
chrY 24000 0.04% 158
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 365958 15 450 150.17 150
global segment-length histogram

Files

Filename Size md5
ENCFF698ZFJ.bed.gz 3.47 MB 3189df8850c029822553c7ce82c15e74
ENCFF698ZFJ.tabix.bed.gz 3.01 MB 1f23add7e3a80cd72ed80f38fc6ace5c
ENCFF698ZFJ.tabix.bed.gz.tbi 865.51 KB 78334bf12116ea4af84dc1d47999b661
genomic_resource.yaml 1.32 KB 5f771011a8be2e676d14c44c5f4f8e29
statistics/