Resource
| Id | DNase-seq/ENCSR000ENA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000ENA [biosample_summary="Homo sapiens astrocyte of the hippocampus"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN571WFV|/analyses/ENCAN571WFV/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENA | float |
DNase-seq_ENCSR000ENA |
DNase-seq ENCSR000ENA [biosample_summary="Homo sapiens astrocyte of the hippocampus"]
|
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[2, 3.36e+04] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 54957417 | 1.71% | 365958 |
| chr1 | 4849318 | 1.95% | 32299 |
| chr2 | 4671006 | 1.93% | 31098 |
| chr3 | 3802021 | 1.92% | 25311 |
| chr4 | 3159020 | 1.66% | 21041 |
| chr5 | 3336097 | 1.84% | 22213 |
| chr6 | 3331133 | 1.95% | 22181 |
| chr7 | 2904049 | 1.82% | 19339 |
| chr8 | 2731178 | 1.88% | 18179 |
| chr9 | 2351268 | 1.70% | 15649 |
| chr10 | 2591033 | 1.94% | 17258 |
| chr11 | 2732360 | 2.02% | 18197 |
| chr12 | 2619302 | 1.97% | 17452 |
| chr13 | 1662581 | 1.45% | 11070 |
| chr14 | 1726426 | 1.61% | 11495 |
| chr15 | 1719594 | 1.69% | 11453 |
| chr16 | 1600593 | 1.77% | 10665 |
| chr17 | 1986242 | 2.39% | 13229 |
| chr18 | 1368041 | 1.70% | 9112 |
| chr19 | 1313441 | 2.24% | 8743 |
| chr20 | 1271565 | 1.97% | 8464 |
| chr21 | 633065 | 1.36% | 4214 |
| chr22 | 848214 | 1.67% | 5649 |
| chrX | 1725870 | 1.11% | 11489 |
| chrY | 24000 | 0.04% | 158 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 365958 | 15 | 450 | 150.17 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF698ZFJ.bed.gz | 3.47 MB | 3189df8850c029822553c7ce82c15e74 |
| ENCFF698ZFJ.tabix.bed.gz | 3.01 MB | 1f23add7e3a80cd72ed80f38fc6ace5c |
| ENCFF698ZFJ.tabix.bed.gz.tbi | 865.51 KB | 78334bf12116ea4af84dc1d47999b661 |
| genomic_resource.yaml | 1.32 KB | 5f771011a8be2e676d14c44c5f4f8e29 |
| statistics/ |
