Resource
| Id | DNase-seq/ENCSR000EMZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EMZ [biosample_summary="Homo sapiens H7"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF540XCT|/files/ENCFF540XCT/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 22009685 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EMZ | float |
DNase-seq_ENCSR000EMZ |
DNase-seq ENCSR000EMZ [biosample_summary="Homo sapiens H7"]
|
 |
[0.0334, 31.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 58707687 | 1.82% | 316009 |
| chr1 | 5948063 | 2.39% | 31350 |
| chr2 | 4702694 | 1.94% | 25576 |
| chr3 | 3874715 | 1.95% | 21034 |
| chr4 | 3355577 | 1.76% | 18478 |
| chr5 | 3474993 | 1.91% | 18748 |
| chr6 | 3492396 | 2.04% | 18919 |
| chr7 | 2997875 | 1.88% | 16324 |
| chr8 | 2819964 | 1.94% | 15265 |
| chr9 | 2367197 | 1.71% | 12804 |
| chr10 | 2710935 | 2.03% | 14620 |
| chr11 | 2854930 | 2.11% | 15244 |
| chr12 | 2795816 | 2.10% | 15044 |
| chr13 | 1731465 | 1.51% | 9473 |
| chr14 | 1820965 | 1.70% | 9779 |
| chr15 | 1708272 | 1.67% | 9152 |
| chr16 | 1708284 | 1.89% | 9090 |
| chr17 | 1950803 | 2.34% | 10303 |
| chr18 | 1430792 | 1.78% | 7727 |
| chr19 | 1435436 | 2.45% | 7400 |
| chr20 | 1411360 | 2.19% | 7508 |
| chr21 | 624911 | 1.34% | 3385 |
| chr22 | 826704 | 1.63% | 4403 |
| chrX | 2658257 | 1.70% | 14342 |
| chrY | 5283 | 0.01% | 41 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 316009 | 2 | 840 | 185.78 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF128SDV.bed.gz | 3.37 MB | 1155b4f97974895f75326e62f4d08b6d |
| ENCFF128SDV.tabix.bed.gz | 3.06 MB | b35e763e4e6ab8acdc29c65478d64e95 |
| ENCFF128SDV.tabix.bed.gz.tbi | 868.95 KB | ef767c9ea9c10f8e281fa3461dc7e824 |
| genomic_resource.yaml | 1.69 KB | c344102d19dd9164849d2bbbca259f16 |
| statistics/ |