Resource
| Id | DNase-seq/ENCSR000EMO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EMO [biosample_summary="Homo sapiens GM04503"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF572JEV|/files/ENCFF572JEV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 33540949 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF239TYW|/files/ENCFF239TYW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 23846115 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EMO | float |
DNase-seq_ENCSR000EMO |
DNase-seq ENCSR000EMO [biosample_summary="Homo sapiens GM04503"]
|
 |
[0.12, 41.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 15202851 | 0.47% | 77615 |
| chr1 | 1432721 | 0.58% | 7302 |
| chr2 | 1321143 | 0.55% | 6724 |
| chr3 | 1070762 | 0.54% | 5449 |
| chr4 | 767549 | 0.40% | 3948 |
| chr5 | 869380 | 0.48% | 4426 |
| chr6 | 973585 | 0.57% | 4950 |
| chr7 | 776058 | 0.49% | 3997 |
| chr8 | 735267 | 0.51% | 3749 |
| chr9 | 641809 | 0.46% | 3253 |
| chr10 | 751728 | 0.56% | 3895 |
| chr11 | 773217 | 0.57% | 3960 |
| chr12 | 760141 | 0.57% | 3850 |
| chr13 | 402560 | 0.35% | 2053 |
| chr14 | 466037 | 0.44% | 2345 |
| chr15 | 514617 | 0.50% | 2587 |
| chr16 | 432166 | 0.48% | 2232 |
| chr17 | 570246 | 0.68% | 2931 |
| chr18 | 335187 | 0.42% | 1734 |
| chr19 | 452436 | 0.77% | 2233 |
| chr20 | 371191 | 0.58% | 1902 |
| chr21 | 166453 | 0.36% | 863 |
| chr22 | 220237 | 0.43% | 1149 |
| chrX | 397943 | 0.26% | 2080 |
| chrY | 418 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 77615 | 1 | 1080 | 195.88 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF847MLV.bed.gz | 842.92 KB | 976968d5f35822030a7a314732bacb5f |
| ENCFF847MLV.tabix.bed.gz | 748.98 KB | 1db79abe467b2852a844bb430e23f7f0 |
| ENCFF847MLV.tabix.bed.gz.tbi | 397.54 KB | f4580c9e04ec00d3f0a53d86a070b83f |
| genomic_resource.yaml | 2.35 KB | 90c64cafa1ea82f9e5b46b5908e8e8b3 |
| statistics/ |