Resource

Id DNase-seq/ENCSR000EMGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EMG [biosample_summary="Homo sapiens HS-5"]
Description
Labels
  • accession: ENCSR000EMG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005282/
  • biosample_summary: Homo sapiens HS-5
  • date_created: 2013-12-12T07:08:14.786327+00:00
  • date_released: 2012-07-23
  • doi: 10.17989/ENCSR000EMG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EMG float

DNase-seq_ENCSR000EMG

DNase-seq ENCSR000EMG [biosample_summary="Homo sapiens HS-5"]
HISTOGRAM FOR DNase-seq_ENCSR000EMG [0.152, 49.9]
n
16,871,402
mean
2.32
sd
1.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 168714020.52% 84582
chr1 1559417 0.63% 7746
chr2 1549833 0.64% 7801
chr3 1243884 0.63% 6197
chr4 958841 0.50% 4889
chr5 1121126 0.62% 5547
chr6 1132068 0.66% 5661
chr7 824190 0.52% 4133
chr8 927081 0.64% 4621
chr9 716779 0.52% 3617
chr10 667313 0.50% 3423
chr11 867923 0.64% 4310
chr12 895091 0.67% 4414
chr13 304984 0.27% 1595
chr14 482835 0.45% 2473
chr15 500163 0.49% 2513
chr16 416747 0.46% 2091
chr17 584281 0.70% 2920
chr18 333698 0.42% 1718
chr19 463676 0.79% 2209
chr20 484312 0.75% 2376
chr21 198437 0.42% 1013
chr22 228191 0.45% 1170
chrX 383974 0.25% 2007
chrY 26558 0.05% 138
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 84582 1 900 199.47 200
global segment-length histogram

Files

Filename Size md5
ENCFF791TKP.bed.gz 892.43 KB e7f17b37b16e57d6a0ae9e1e1c4d5d20
ENCFF791TKP.tabix.bed.gz 801.39 KB 51643c71bf995aa1edfd3b20518fbaa7
ENCFF791TKP.tabix.bed.gz.tbi 430.65 KB 803e7c8f54fa18b2ba93e1fe58e815ca
genomic_resource.yaml 1.7 KB 23b090dafa503e9227a56323dad55dc6
statistics/