Resource

Id DNase-seq/ENCSR000EMFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EMF [biosample_summary="Homo sapiens HS-27A"]
Description
Labels
  • accession: ENCSR000EMF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005283/
  • biosample_summary: Homo sapiens HS-27A
  • date_created: 2013-09-13T16:00:26.742440-08:00
  • date_released: 2012-07-23
  • doi: 10.17989/ENCSR000EMF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EMF float

DNase-seq_ENCSR000EMF
DNase-seq ENCSR000EMF [biosample_summary="Homo sapiens HS-27A"]
 HISTOGRAM FOR DNase-seq_ENCSR000EMF [3, 613]
n
14,558,062
mean
52.1
sd
47

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 145580620.45% 96813
chr1 1426297 0.57% 9484
chr2 1219023 0.50% 8099
chr3 1114888 0.56% 7409
chr4 840650 0.44% 5594
chr5 788368 0.43% 5245
chr6 945248 0.55% 6291
chr7 633651 0.40% 4210
chr8 712913 0.49% 4740
chr9 543441 0.39% 3614
chr10 538486 0.40% 3583
chr11 755672 0.56% 5025
chr12 809803 0.61% 5383
chr13 339231 0.30% 2256
chr14 476869 0.45% 3168
chr15 529046 0.52% 3522
chr16 423343 0.47% 2817
chr17 474258 0.57% 3156
chr18 341536 0.42% 2270
chr19 448138 0.76% 2981
chr20 371296 0.58% 2473
chr21 203416 0.44% 1354
chr22 224213 0.44% 1495
chrX 366058 0.23% 2429
chrY 32218 0.06% 215
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 96813 7 450 150.37 150
global segment-length histogram

Files

Filename Size md5
ENCFF932FKV.bed.gz 935.17 KB 422de51e46ccf7f128592aafc8679e31
ENCFF932FKV.tabix.bed.gz 804.04 KB 1b553bdbb856cdf6b04508ab71cecc03
ENCFF932FKV.tabix.bed.gz.tbi 444.27 KB 313a941f4e45ebf80022fb0d06b4a95b
genomic_resource.yaml 1.26 KB c224a4e1e02874a1963bc681a197b0b8
statistics/