Resource

Id DNase-seq/ENCSR000EMCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EMC [biosample_summary="Homo sapiens fibroblast of the aortic adventitia female"]
Description
Labels
  • accession: ENCSR000EMC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002547/
  • biosample_summary: Homo sapiens fibroblast of the aortic adventitia female
  • date_created: 2014-01-17T20:40:30.057112+00:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000EMC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EMC float

DNase-seq_ENCSR000EMC

DNase-seq ENCSR000EMC [biosample_summary="Homo sapiens fibroblast of the aortic adventitia female"]
HISTOGRAM FOR DNase-seq_ENCSR000EMC [0.0252, 53.1]
n
49,945,390
mean
1.73
sd
3.01

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 499453901.55% 256044
chr1 4562764 1.83% 23517
chr2 4293718 1.77% 21923
chr3 3513459 1.77% 17936
chr4 2771434 1.46% 14296
chr5 2988328 1.65% 15230
chr6 3152509 1.85% 16032
chr7 2541480 1.59% 13122
chr8 2442602 1.68% 12477
chr9 2186672 1.58% 11205
chr10 2448724 1.83% 12479
chr11 2428166 1.80% 12402
chr12 2568677 1.93% 13091
chr13 1417136 1.24% 7203
chr14 1506304 1.41% 7704
chr15 1659342 1.63% 8480
chr16 1316985 1.46% 6886
chr17 1828236 2.20% 9432
chr18 1175594 1.46% 6003
chr19 1220380 2.08% 6302
chr20 1143340 1.77% 5925
chr21 588260 1.26% 2982
chr22 766925 1.51% 3966
chrX 1423797 0.91% 7447
chrY 558 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 256044 1 1000 195.07 190
global segment-length histogram

Files

Filename Size md5
ENCFF120WYH.bed.gz 2.76 MB 38a41a683f5a5ba6dca03a5818cffaf6
ENCFF120WYH.tabix.bed.gz 2.52 MB 992f4d56a20683f3ce97e63e7b57d405
ENCFF120WYH.tabix.bed.gz.tbi 684.22 KB 19edf79f25dd1b1bbe1bdc1e2d30f882
genomic_resource.yaml 1.8 KB 916d9ef080e74a21d07337011fcb0efe
statistics/