Resource
| Id | DNase-seq/ENCSR000EMC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EMC [biosample_summary="Homo sapiens fibroblast of the aortic adventitia female"] |
| Description |
status: released biological_replicates: Rep 2 summary: female output_type: peaks audit_warning: Alignment file {ENCFF564GKX|/files/ENCFF564GKX/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30639778 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EMC | float |
DNase-seq_ENCSR000EMC |
DNase-seq ENCSR000EMC [biosample_summary="Homo sapiens fibroblast of the aortic adventitia female"]
|
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[0.0252, 53.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 49945390 | 1.55% | 256044 |
| chr1 | 4562764 | 1.83% | 23517 |
| chr2 | 4293718 | 1.77% | 21923 |
| chr3 | 3513459 | 1.77% | 17936 |
| chr4 | 2771434 | 1.46% | 14296 |
| chr5 | 2988328 | 1.65% | 15230 |
| chr6 | 3152509 | 1.85% | 16032 |
| chr7 | 2541480 | 1.59% | 13122 |
| chr8 | 2442602 | 1.68% | 12477 |
| chr9 | 2186672 | 1.58% | 11205 |
| chr10 | 2448724 | 1.83% | 12479 |
| chr11 | 2428166 | 1.80% | 12402 |
| chr12 | 2568677 | 1.93% | 13091 |
| chr13 | 1417136 | 1.24% | 7203 |
| chr14 | 1506304 | 1.41% | 7704 |
| chr15 | 1659342 | 1.63% | 8480 |
| chr16 | 1316985 | 1.46% | 6886 |
| chr17 | 1828236 | 2.20% | 9432 |
| chr18 | 1175594 | 1.46% | 6003 |
| chr19 | 1220380 | 2.08% | 6302 |
| chr20 | 1143340 | 1.77% | 5925 |
| chr21 | 588260 | 1.26% | 2982 |
| chr22 | 766925 | 1.51% | 3966 |
| chrX | 1423797 | 0.91% | 7447 |
| chrY | 558 | <0.01% | 4 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 256044 | 1 | 1000 | 195.07 | 190 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF120WYH.bed.gz | 2.76 MB | 38a41a683f5a5ba6dca03a5818cffaf6 |
| ENCFF120WYH.tabix.bed.gz | 2.52 MB | 992f4d56a20683f3ce97e63e7b57d405 |
| ENCFF120WYH.tabix.bed.gz.tbi | 684.22 KB | 19edf79f25dd1b1bbe1bdc1e2d30f882 |
| genomic_resource.yaml | 1.8 KB | 916d9ef080e74a21d07337011fcb0efe |
| statistics/ |
