Resource
| Id | DNase-seq/ENCSR000ELX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000ELX [biosample_summary="Homo sapiens AG04449"] |
| Description |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN953ASI|/analyses/ENCAN953ASI/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF270GSM|/files/ENCFF270GSM/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 31715166 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF755DTB|/files/ENCFF755DTB/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 28983974 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF279WTM|/files/ENCFF279WTM/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 31526395 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF881KPD|/files/ENCFF881KPD/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 28822973 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000ELX | float |
DNase-seq_ENCSR000ELX |
DNase-seq ENCSR000ELX [biosample_summary="Homo sapiens AG04449"]
|
 |
[3, 2.78e+04] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 12832323 | 0.40% | 85441 |
| chr1 | 1184319 | 0.48% | 7888 |
| chr2 | 1120069 | 0.46% | 7462 |
| chr3 | 925780 | 0.47% | 6157 |
| chr4 | 696990 | 0.37% | 4641 |
| chr5 | 794317 | 0.44% | 5288 |
| chr6 | 824961 | 0.48% | 5495 |
| chr7 | 646899 | 0.41% | 4303 |
| chr8 | 624425 | 0.43% | 4158 |
| chr9 | 535200 | 0.39% | 3564 |
| chr10 | 611550 | 0.46% | 4072 |
| chr11 | 653942 | 0.48% | 4356 |
| chr12 | 649800 | 0.49% | 4327 |
| chr13 | 354000 | 0.31% | 2354 |
| chr14 | 391200 | 0.37% | 2603 |
| chr15 | 433650 | 0.43% | 2889 |
| chr16 | 358011 | 0.40% | 2385 |
| chr17 | 453410 | 0.54% | 3020 |
| chr18 | 290400 | 0.36% | 1935 |
| chr19 | 312450 | 0.53% | 2081 |
| chr20 | 298200 | 0.46% | 1986 |
| chr21 | 159150 | 0.34% | 1060 |
| chr22 | 188700 | 0.37% | 1256 |
| chrX | 307200 | 0.20% | 2043 |
| chrY | 17700 | 0.03% | 118 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 85441 | 61 | 300 | 150.19 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF984DFQ.bed.gz | 829.05 KB | 831198aa9adce95b168dc5dc54a0a0e5 |
| ENCFF984DFQ.tabix.bed.gz | 713.29 KB | 7039c7f1fc48ecc6c097a5658432d49f |
| ENCFF984DFQ.tabix.bed.gz.tbi | 441.92 KB | 87f9379e0d5cf378f45301933005cf34 |
| genomic_resource.yaml | 3.74 KB | 1b796c0798a29b585e7333b0290e2262 |
| statistics/ |