Resource
| Id | DNase-seq/ENCSR000ELW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000ELW [biosample_summary="Homo sapiens A549"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF194GNS|/files/ENCFF194GNS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30796313 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000ELW | float |
DNase-seq_ENCSR000ELW |
DNase-seq ENCSR000ELW [biosample_summary="Homo sapiens A549"]
|
![]() |
[0.0393, 111] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 27093717 | 0.84% | 143762 |
| chr1 | 2391423 | 0.96% | 12614 |
| chr2 | 2180240 | 0.90% | 11655 |
| chr3 | 1615958 | 0.81% | 8691 |
| chr4 | 1251987 | 0.66% | 6830 |
| chr5 | 1496074 | 0.82% | 7996 |
| chr6 | 1514561 | 0.89% | 8027 |
| chr7 | 1390473 | 0.87% | 7462 |
| chr8 | 1270346 | 0.88% | 6762 |
| chr9 | 1166279 | 0.84% | 6152 |
| chr10 | 1290920 | 0.96% | 6876 |
| chr11 | 1299057 | 0.96% | 6893 |
| chr12 | 1546382 | 1.16% | 8053 |
| chr13 | 607570 | 0.53% | 3314 |
| chr14 | 874137 | 0.82% | 4658 |
| chr15 | 932481 | 0.91% | 4911 |
| chr16 | 875969 | 0.97% | 4649 |
| chr17 | 1335466 | 1.60% | 6891 |
| chr18 | 530939 | 0.66% | 2856 |
| chr19 | 1103306 | 1.88% | 5546 |
| chr20 | 786948 | 1.22% | 4147 |
| chr21 | 263165 | 0.56% | 1384 |
| chr22 | 462417 | 0.91% | 2449 |
| chrX | 870525 | 0.56% | 4732 |
| chrY | 37094 | 0.06% | 214 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 143762 | 1 | 920 | 188.46 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF128ZVL.bed.gz | 1.55 MB | fe838d13b4f90aee9183969f3f72e4b3 |
| ENCFF128ZVL.tabix.bed.gz | 1.42 MB | 01ea498d1a6ad6c5bb2ae88b3adc1978 |
| ENCFF128ZVL.tabix.bed.gz.tbi | 535.55 KB | 399166271864018e7cac287e72f65610 |
| genomic_resource.yaml | 1.69 KB | 72ea1fd174e6db99e3b5fd04eefa31be |
| statistics/ |
