Resource

Id DNase-seq/ENCSR000ELQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000ELQ [biosample_summary="Homo sapiens SK-N-SH"]
Description
Labels
  • accession: ENCSR000ELQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003072/
  • biosample_summary: Homo sapiens SK-N-SH
  • date_created: 2014-01-30T18:52:44.395181+00:00
  • date_released: 2012-08-28
  • doi: 10.17989/ENCSR000ELQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment: The data quality is too poor for processing.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000ELQ float

DNase-seq_ENCSR000ELQ

DNase-seq ENCSR000ELQ [biosample_summary="Homo sapiens SK-N-SH"]
HISTOGRAM FOR DNase-seq_ENCSR000ELQ [0.0362, 35.9]
n
31,237,005
mean
1.83
sd
2.77

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 312370050.97% 157763
chr1 2727568 1.10% 13763
chr2 2488557 1.03% 12605
chr3 1723365 0.87% 8936
chr4 1294246 0.68% 6696
chr5 1532433 0.84% 7859
chr6 1476951 0.86% 7669
chr7 1974085 1.24% 9871
chr8 1316799 0.91% 6748
chr9 1391026 1.01% 6961
chr10 1528001 1.14% 7745
chr11 1807434 1.34% 8927
chr12 1402072 1.05% 7174
chr13 671407 0.59% 3541
chr14 982703 0.92% 4865
chr15 994913 0.98% 5034
chr16 1144568 1.27% 5711
chr17 1811898 2.18% 8817
chr18 564166 0.70% 2949
chr19 1614260 2.75% 7918
chr20 897285 1.39% 4462
chr21 337983 0.72% 1735
chr22 783679 1.54% 3807
chrX 771188 0.49% 3966
chrY 418 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 157763 1 1080 198 180
global segment-length histogram

Files

Filename Size md5
ENCFF752OZB.bed.gz 1.67 MB cdae41c636b732b640544d66d934c06f
ENCFF752OZB.tabix.bed.gz 1.55 MB c8ef5bb274166ff52bc9a38a8123ed67
ENCFF752OZB.tabix.bed.gz.tbi 489.99 KB d2d47e8cb3a30755de66fe3c69cee162
genomic_resource.yaml 1.33 KB 99bca5bdf7016631d5b449abb4594f51
statistics/