Resource
| Id | DNase-seq/ENCSR000ELO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000ELO [biosample_summary="Homo sapiens psoas muscle tissue male adult (27 years) and male adult (35 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (35 years) male adult (27 years) output_type: peaks audit_internal_action: Released analysis {ENCAN634ADV|/analyses/ENCAN634ADV/} has in progress subobject document {0decec07-b82c-476d-8b56-ea1eede891db|/documents/0decec07-b82c-476d-8b56-ea1eede891db/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF714MIK|/files/ENCFF714MIK/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.26. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000ELO | float |
DNase-seq_ENCSR000ELO |
DNase-seq ENCSR000ELO [biosample_summary="Homo sapiens psoas muscle tissue male adult (27 years) and male adult (35 years)"]
|
 |
[0.064, 33.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 20277511 | 0.63% | 107620 |
| chr1 | 1911444 | 0.77% | 10013 |
| chr2 | 1486747 | 0.61% | 7983 |
| chr3 | 1086443 | 0.55% | 5931 |
| chr4 | 814427 | 0.43% | 4445 |
| chr5 | 1002314 | 0.55% | 5397 |
| chr6 | 1051844 | 0.62% | 5625 |
| chr7 | 1073915 | 0.67% | 5676 |
| chr8 | 911891 | 0.63% | 4769 |
| chr9 | 883326 | 0.64% | 4699 |
| chr10 | 1006094 | 0.75% | 5321 |
| chr11 | 1158525 | 0.86% | 6052 |
| chr12 | 967894 | 0.73% | 5246 |
| chr13 | 439615 | 0.38% | 2370 |
| chr14 | 681313 | 0.64% | 3591 |
| chr15 | 676497 | 0.66% | 3630 |
| chr16 | 755339 | 0.84% | 4000 |
| chr17 | 1098449 | 1.32% | 5749 |
| chr18 | 377133 | 0.47% | 2026 |
| chr19 | 1185947 | 2.02% | 6006 |
| chr20 | 566233 | 0.88% | 3040 |
| chr21 | 243403 | 0.52% | 1290 |
| chr22 | 448373 | 0.88% | 2345 |
| chrX | 450061 | 0.29% | 2413 |
| chrY | 284 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 107620 | 1 | 1300 | 188.42 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF336IOL.bed.gz | 1.12 MB | c30771453da13cf7770f5e6a5046693d |
| ENCFF336IOL.tabix.bed.gz | 1.03 MB | 6b1c71c9ab9aee2a81b3af7f2806d47a |
| ENCFF336IOL.tabix.bed.gz.tbi | 369.7 KB | 421b637ac51fd012da22c93b0d0573de |
| genomic_resource.yaml | 2.36 KB | e373b6330e4a0842a3228df75c216a9a |
| statistics/ |