Resource
| Id | DNase-seq/ENCSR000ELE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000ELE [biosample_summary="Homo sapiens CD14-positive monocyte female"] |
| Description |
status: released biological_replicates: Rep 1 summary: female output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF806MXQ|/files/ENCFF806MXQ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.24. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN099HNN|/analyses/ENCAN099HNN/} has in progress subobject document {47265b5f-917b-4721-b04f-c21091d0b41f|/documents/47265b5f-917b-4721-b04f-c21091d0b41f/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000ELE | float |
DNase-seq_ENCSR000ELE |
DNase-seq ENCSR000ELE [biosample_summary="Homo sapiens CD14-positive monocyte female"]
|
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[0.0742, 14.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 10181201 | 0.32% | 58403 |
| chr1 | 1000801 | 0.40% | 5725 |
| chr2 | 731853 | 0.30% | 4266 |
| chr3 | 604278 | 0.30% | 3468 |
| chr4 | 387588 | 0.20% | 2259 |
| chr5 | 442755 | 0.24% | 2595 |
| chr6 | 555416 | 0.33% | 3244 |
| chr7 | 486121 | 0.31% | 2788 |
| chr8 | 438095 | 0.30% | 2493 |
| chr9 | 443987 | 0.32% | 2542 |
| chr10 | 467450 | 0.35% | 2707 |
| chr11 | 566284 | 0.42% | 3231 |
| chr12 | 534851 | 0.40% | 3062 |
| chr13 | 190992 | 0.17% | 1100 |
| chr14 | 345548 | 0.32% | 1952 |
| chr15 | 329131 | 0.32% | 1885 |
| chr16 | 376138 | 0.42% | 2141 |
| chr17 | 575273 | 0.69% | 3283 |
| chr18 | 173250 | 0.22% | 998 |
| chr19 | 622369 | 1.06% | 3444 |
| chr20 | 301257 | 0.47% | 1737 |
| chr21 | 122782 | 0.26% | 722 |
| chr22 | 255043 | 0.50% | 1427 |
| chrX | 229939 | 0.15% | 1334 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 58403 | 1 | 780 | 174.33 | 163 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF508FIN.bed.gz | 632.86 KB | c59e3311cbb968a9701fd377afe92599 |
| ENCFF508FIN.tabix.bed.gz | 576.77 KB | 8b84b58d8f6b04ced14fd6332bc5883d |
| ENCFF508FIN.tabix.bed.gz.tbi | 254.68 KB | b39cb1236faa27598d72900adbdaed8b |
| genomic_resource.yaml | 2.17 KB | eb64189db7be8e4c20b97b659b746aa3 |
| statistics/ |
